Hi,
I think you need to do the centering and stripping on the individual
trajectories first and then combine the centered and stripped trajectories.
Also try to open the combined trajectory in VMD just to make sure that you
are actually getting a trajectory file
Regards
Mahmood
On 16 February 2015 at 14:29, Ayesha Fatima <ayeshafatima.69.gmail.com>
wrote:
> Dear all,
> I am trying to combine my trajectoriesto reduce the memory requirements of
> ptraj to run the hbond anlaysis facility. there is no error in making the
> combined trajectory, however when i run the hbond analysis, the
> trajectories are not read. Any advise is useful. I am using Amber 12.
> Thank you
> Ayesha Fatima
> PhD candidate UM
>
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Received on Mon Feb 16 2015 - 09:00:03 PST
