Dear users,
I have run an AMD simulation on a 900 amino acid long protein structure.
I wanted to reweigh 2D histogram data from PCA, using the link given on
amber tutorial:
http://mccammon.ucsd.edu/computing/amdReweighting/
But the note at the end says that the current reweighing scheme will work
only for proteins that are 10-40 residues long...for larger structures the
profiles will be too noisy...
Can you please suggest any other scheme which i can use for reweighing?
Thank you
Asmita
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Received on Mon Feb 16 2015 - 08:00:03 PST
