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-- Jason M. Swails BioMaPS, Rutgers University Postdoctoral Researcher > On Feb 15, 2015, at 3:36 PM, Robert Wohlhueter <bobwohlhueter.earthlink.net> wrote: > > And, from within python, `import sys`, then `print sys.path` shows that > lib-dynload path (among others)/ > >> On 2/15/15 2:53 PM, Novosielski, Ryan wrote: >> Sounds like you need to install the Python datetime module. Am I missing something? >> >> ____ *Note: UMDNJ is now Rutgers-Biomedical and Health Sciences* >> || \\UTGERS |---------------------*O*--------------------- >> ||_// Biomedical | Ryan Novosielski - Senior Technologist >> || \\ and Health | novosirj.rutgers.edu<mailto:novosirj.rutgers.edu>- 973/972.0922 (2x0922) >> || \\ Sciences | OIRT/High Perf & Res Comp - MSB C630, Newark >> `' >> >> On Feb 15, 2015, at 14:05, Robert Wohlhueter <bobwohlhueter.earthlink.net<mailto:bobwohlhueter.earthlink.net>> wrote: >> >> [With Ubuntu 14.04 running on AMD64-bit machine, with Python2.7.5 installed] >> >> Folowing http://jswails.wikidot.com/installing-amber14-and-ambertools14 >> instructions for building serial AmberTools14 + Amber14 --i.e `configure >> gnu`, then `make install` -- the configure phase seems to be successful, >> but the make phase, after a whole lot of productive compilation work, >> reports the following error: >> >> gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -DHASGZ >> -DHASBZ2 -o UnitCell UnitCell.o >> /usr/local/lib/amber14/lib/libXtal.a -lm >> mv AddToBox ChBox PropPDB UnitCell /usr/local/lib/amber14/bin >> make[2]: Leaving directory >> `/mnt/sata4_1tb/usr/local/lib/amber14/AmberTools/src/xtalutil/CPrograms' >> #(cd xtalutil/Phenix/ && make no ) >> (cd parmed && make install) >> make[2]: Entering directory >> `/mnt/sata4_1tb/usr/local/lib/amber14/AmberTools/src/parmed' >> ./setup.sh /usr/local/lib/amber14/bin /usr/bin/python2.7 >> Traceback (most recent call last): >> File "<string>", line 1, in <module> >> File "chemistry/amber/readparm.py", line 25, in <module> >> from chemistry.amber.amberformat import AmberFormat >> File "chemistry/amber/amberformat.py", line 13, in <module> >> import datetime >> ImportError: No module named datetime >> make[2]: *** [install] Error 1 >> make[2]: Leaving directory >> `/mnt/sata4_1tb/usr/local/lib/amber14/AmberTools/src/parmed' >> make[1]: *** [serial] Error 2 >> make[1]: Leaving directory >> `/mnt/sata4_1tb/usr/local/lib/amber14/AmberTools/src' >> make: *** [install] Error 2 >> bobw.winter: ...lib/amber14 [80]> >> >> Apparently the error stems from some deficiency in my Python >> installation. But re-installation of Python 2.7.5 via Synaptic does not >> fix the problem. And I haven't a clue how to track down the problem. >> >> Anyone have suggestions? >> >> Thanks, >> >> Bob Wohlhueter >> _______________________________________________ >> AMBER mailing list >> AMBER.ambermd.org<mailto:AMBER.ambermd.org> >> http://lists.ambermd.org/mailman/listinfo/amber >> _______________________________________________ >> AMBER mailing list >> AMBER.ambermd.org >> http://lists.ambermd.org/mailman/listinfo/amber > > > _______________________________________________ > AMBER mailing list > AMBER.ambermd.org > http://lists.ambermd.org/mailman/listinfo/amber _______________________________________________ AMBER mailing list AMBER.ambermd.org http://lists.ambermd.org/mailman/listinfo/amberReceived on Sun Feb 15 2015 - 13:30:02 PST