On Wed, Feb 11, 2015, Iqbal, Muhammad Sajid wrote:
>
> How I can get the atomic list and coordinates involve in solvent accessible
> area from PDB structure. Any suggestion regarding program or script would
> be great.
I'm not sure exactly what you are looking for. The ms.f program (in
AmberTools/src/nab) can give you coordinates for a set of points (not atoms)
that discretize the molecular surface (or the solvent accessible surface).
Maybe this will help.
....dac
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Received on Wed Feb 11 2015 - 20:00:03 PST
