Dear AMBER community,
we have fixed an issue in MemGen (memgen.uni-goettingen.de) that did
previously not allow multiple residues in one lipid molecules.
Now, AMBER lipids should (hopefully) work without problems.
Please give it a try at (takes < 1 minute):
http://memgen.uni-goettingen.de/
and please send us any feedback you have.
With best wishes,
Jochen
Am 08/02/15 um 12:32 schrieb Jochen Hub:
> Subject: New web server for setup of membrane simulation systems
>
> Dear MD community,
>
> we have set up a web server that automatically sets up membrane
> simulation systems containing an arbitrary mixture of different lipids.
> The server, called MemGen (memgen.uni-goettingen.de) is not restricted
> to a specific set of lipid types, force fields, or MD software. Instead,
> MemGen works with any all-atom or united-atom lipid, any detergent,
> alcolol, etc.
>
> The user uploads the lipids in one of various file formats (pdb, crd,
> xyz, ml2, gro), and the webserver returns a PDB file of the lipid patch
> with the requested number relative concentration of the lipids,
> requested number of water molecules per lipid, and salt content.
> Counterions are always added.
>
> Please give it a try at:
>
> http://memgen.uni-goettingen.de/
>
> Happy simulating,
> The MemGen team at the University of Göttingen
>
--
---------------------------------------------------
Dr. Jochen Hub
Computational Molecular Biophysics Group
Institute for Microbiology and Genetics
Georg-August-University of Göttingen
Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany.
Phone: +49-551-39-14189
http://cmb.bio.uni-goettingen.de/
---------------------------------------------------
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Received on Wed Feb 18 2015 - 02:30:02 PST
