[AMBER] protein falls apart on explicit solvation md

From: Anupam Goel <goelan.uab.edu>
Date: Fri, 6 Feb 2015 20:04:36 +0000

Hi all, I am running explicit solvent simulation for the first time and my structure falls apart. Has anyone noticed such behavior before? Please suggest troubleshooting. I am attaching a picture of what the trajectory looks like on vmd. Also, attaching mdcrd, prmtop and other associated files. Thanks, AG

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Received on Fri Feb 06 2015 - 12:30:02 PST