I am sorry, VMD does not read all the frames, it reads up to 3660.
According to catdcd the total number of frames is 5500. The log file also
says that 5500 frames were written to the dcd file (the simulation was
conducted with NAMD using amber topologies).
On 21 February 2015 at 23:06, Thomas Evangelidis <tevang3.gmail.com> wrote:
> Is there any way to fix this error? I am trying to strip atoms from a dcd
> file with cpptraj but I get this error and only a portion of the frames
> is written. Remarkably, VMD can read all the frames of the dcd file.
> catdcd & trjconv also stop at the same point as cpptraj.
>
>
>
> --
>
> ======================================================================
>
> Thomas Evangelidis
>
> PhD student
> University of Athens
> Faculty of Pharmacy
> Department of Pharmaceutical Chemistry
> Panepistimioupoli-Zografou
> 157 71 Athens
> GREECE
>
> email: tevang.pharm.uoa.gr
>
> tevang3.gmail.com
>
>
> website: https://sites.google.com/site/thomasevangelidishomepage/
>
> ===============================================================
>
> *Physics is the only real science. The rest are just stamp collecting.*
>
> *- Ernest Rutherford*
>
>
--
======================================================================
Thomas Evangelidis
PhD student
University of Athens
Faculty of Pharmacy
Department of Pharmaceutical Chemistry
Panepistimioupoli-Zografou
157 71 Athens
GREECE
email: tevang.pharm.uoa.gr
tevang3.gmail.com
website: https://sites.google.com/site/thomasevangelidishomepage/
===============================================================
*Physics is the only real science. The rest are just stamp collecting.*
*- Ernest Rutherford*
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Received on Sat Feb 21 2015 - 13:30:03 PST
