Amber Archive Apr 2015 by author
574 messages
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Starting
Tue Mar 31 2015 - 20:30:03 PDT,
Ending
Thu Apr 30 2015 - 16:00:02 PDT
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abdennour braka
Re: [AMBER] New Force Field
(Wed Apr 01 2015 - 07:06:42 PDT)
Abhishek TYAGI
Re: [AMBER] Error with quasi-harmonic MMPBSA.py calculations
(Thu Apr 23 2015 - 00:56:00 PDT)
Re: [AMBER] Error with quasi-harmonic MMPBSA.py calculations
(Fri Apr 17 2015 - 08:30:04 PDT)
[AMBER] Error with quasi-harmonic MMPBSA.py calculations
(Wed Apr 15 2015 - 21:26:20 PDT)
Re: [AMBER] MMPBSA error
(Tue Apr 14 2015 - 17:43:19 PDT)
Re: [AMBER] MMPBSA error
(Thu Apr 09 2015 - 21:12:06 PDT)
Re: [AMBER] MMPBSA error
(Wed Apr 08 2015 - 20:50:51 PDT)
Re: [AMBER] MMPBSA error
(Mon Apr 06 2015 - 20:28:08 PDT)
Re: [AMBER] MMPBSA error
(Mon Apr 06 2015 - 20:05:55 PDT)
Re: [AMBER] MMPBSA error
(Wed Apr 01 2015 - 06:35:10 PDT)
Adnan Gulzar
[AMBER] Error
(Sat Apr 11 2015 - 15:18:53 PDT)
Adrian Roitberg
Re: [AMBER] New Force Field
(Wed Apr 01 2015 - 05:25:31 PDT)
Ahmed Ezat
Re: [AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 07:00:50 PDT)
Re: [AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 06:53:15 PDT)
Re: [AMBER] MMPBSA on NAMD DCD Trajectories
(Fri Apr 10 2015 - 05:37:36 PDT)
[AMBER] MMPBSA on NAMD DCD Trajectories
(Fri Apr 10 2015 - 03:55:25 PDT)
AJ Venkatakrishnan
Re: [AMBER] Amber GPU Segmentation fault
(Fri Apr 24 2015 - 19:02:05 PDT)
[AMBER] Amber GPU Segmentation fault
(Tue Apr 21 2015 - 15:29:31 PDT)
Alain Chaumont
[AMBER] Force Field Parameters for Monoamino Acids at acidic and basic conditions?
(Fri Apr 10 2015 - 00:08:21 PDT)
Alessandro Contini
Re: [AMBER] New Force Field
(Wed Apr 01 2015 - 07:08:13 PDT)
Re: [AMBER] New Force Field
(Wed Apr 01 2015 - 06:18:58 PDT)
Andrew Schaub
Re: [AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 15:30:33 PDT)
anu chandra
Re: [AMBER] Query about microsecond long simulation
(Thu Apr 30 2015 - 05:06:54 PDT)
Re: [AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 08:46:01 PDT)
Re: [AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 07:34:04 PDT)
[AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 06:20:22 PDT)
[AMBER] Charmm force field parameters in Amber
(Mon Apr 13 2015 - 06:33:30 PDT)
Arjun Sharma
[AMBER] intercalations
(Fri Apr 10 2015 - 16:36:30 PDT)
Ashutosh Shandilya
Re: [AMBER] Deletion of H atoms from pdb file used for MD simulations
(Wed Apr 15 2015 - 02:19:03 PDT)
Asmita Gupta
Re: [AMBER] close contacts in equilibrated structure
(Sat Apr 25 2015 - 14:59:35 PDT)
[AMBER] close contacts in equilibrated structure
(Sat Apr 25 2015 - 08:37:25 PDT)
[AMBER] water box for steered md amber14
(Thu Apr 23 2015 - 10:50:54 PDT)
Atila Petrosian
[AMBER] error in amber installation
(Tue Apr 28 2015 - 04:14:55 PDT)
Re: [AMBER] install Amber 11 and AmberTools 1.5 on CentoS 6.3
(Wed Apr 22 2015 - 10:47:31 PDT)
[AMBER] install Amber 11 and AmberTools 1.5 on CentoS 6.3
(Tue Apr 21 2015 - 21:18:05 PDT)
[AMBER] install Amber 11 and AmberTools 1.5 on CentoS 6.3
(Tue Apr 21 2015 - 12:02:46 PDT)
[AMBER] all in one pc for MD simulation calculations
(Thu Apr 16 2015 - 07:50:45 PDT)
[AMBER] hydrogen bond analysis using cpptraj in amber tools 14
(Tue Apr 14 2015 - 01:25:27 PDT)
Ayesha Fatima
[AMBER] defining residues in steered molecular dynamics
(Wed Apr 08 2015 - 07:57:53 PDT)
Re: [AMBER] AHTECHAMBER - G09
(Wed Apr 08 2015 - 07:33:47 PDT)
Bajarang Kumbhar
[AMBER] Nmode analysis calculation problem for Implicit simulation.
(Tue Apr 28 2015 - 04:06:53 PDT)
Bala subramanian
[AMBER] lipid simulation queries
(Wed Apr 29 2015 - 10:03:33 PDT)
Balaji Selvam
[AMBER] Fwd: Tleap atom type - template not found
(Mon Apr 27 2015 - 23:02:29 PDT)
Benjamin D Madej
Re: [AMBER] Error in tutorial A16, Amber 14
(Thu Apr 09 2015 - 13:28:19 PDT)
Re: [AMBER] Error in tutorial A16, Amber 14
(Wed Apr 08 2015 - 20:15:08 PDT)
Bill Ross
Re: [AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 10:47:15 PDT)
Re: [AMBER] segmentation fault in AmberTool 14.25
(Sat Apr 25 2015 - 13:49:16 PDT)
Re: [AMBER] error in minimization
(Sun Apr 12 2015 - 21:20:41 PDT)
Re: [AMBER] Arrangement of molecules in 3D packed state
(Sun Apr 12 2015 - 17:04:50 PDT)
Re: [AMBER] error in minimization
(Sun Apr 12 2015 - 16:06:22 PDT)
Re: [AMBER] error in minimization
(Sun Apr 12 2015 - 09:53:30 PDT)
Re: [AMBER] intercalations
(Sun Apr 12 2015 - 09:50:02 PDT)
Re: [AMBER] error in minimization
(Sat Apr 11 2015 - 21:03:58 PDT)
Re: [AMBER] Error while running MMPBSA
(Thu Apr 02 2015 - 08:31:25 PDT)
Biswa Ranjan Meher
[AMBER] Simulations at High temperature (425K)
(Fri Apr 24 2015 - 07:17:17 PDT)
Brian Radak
Re: [AMBER] Problem regarding PMF curve
(Thu Apr 23 2015 - 06:12:19 PDT)
[AMBER] Trouble recomputing aMD boost from amdlog/mdout
(Fri Apr 03 2015 - 12:42:02 PDT)
Re: [AMBER] How to obtain potential energy using mdcrd trajectories in AMBER12
(Thu Apr 02 2015 - 13:49:14 PDT)
Re: [AMBER] How to obtain potential energy using mdcrd trajectories in AMBER12
(Thu Apr 02 2015 - 12:06:23 PDT)
Carlos Romero
Re: [AMBER] error in minimization
(Tue Apr 14 2015 - 09:52:28 PDT)
Re: [AMBER] error in minimization
(Tue Apr 14 2015 - 08:55:38 PDT)
Re: [AMBER] error in minimization
(Mon Apr 13 2015 - 10:29:09 PDT)
Re: [AMBER] error in minimization
(Mon Apr 13 2015 - 10:23:07 PDT)
Re: [AMBER] error in minimization
(Mon Apr 13 2015 - 10:00:28 PDT)
Re: [AMBER] error in minimization
(Mon Apr 13 2015 - 06:30:20 PDT)
Re: [AMBER] error in minimization
(Sun Apr 12 2015 - 20:18:37 PDT)
Re: [AMBER] error in minimization
(Sun Apr 12 2015 - 16:45:38 PDT)
Re: [AMBER] error in minimization
(Sun Apr 12 2015 - 12:05:08 PDT)
Re: [AMBER] error in minimization
(Sun Apr 12 2015 - 08:37:00 PDT)
Re: [AMBER] error in minimization
(Sat Apr 11 2015 - 22:25:53 PDT)
[AMBER] error in minimization
(Sat Apr 11 2015 - 13:55:32 PDT)
Carlos Simmerling
Re: [AMBER] Simulations at High temperature (425K)
(Fri Apr 24 2015 - 07:21:50 PDT)
Re: [AMBER] Could anyone tell me how to run targeted MD correctly
(Fri Apr 17 2015 - 10:17:19 PDT)
Re: [AMBER] Could anyone tell me how to run targeted MD correctly
(Fri Apr 17 2015 - 05:24:37 PDT)
Re: [AMBER] AMBER parametrization questions
(Mon Apr 13 2015 - 06:36:12 PDT)
Re: [AMBER] The force field used in MCPB
(Tue Apr 07 2015 - 09:01:08 PDT)
Re: [AMBER] The Meaning of Some Parameters
(Sun Apr 05 2015 - 05:19:17 PDT)
Re: [AMBER] New Force Field
(Wed Apr 01 2015 - 07:36:35 PDT)
Re: [AMBER] New Force Field
(Wed Apr 01 2015 - 06:41:26 PDT)
CHAMI F.
Re: [AMBER] cpptraj V14.25 issues with old Amber topology files (Amber 11)
(Mon Apr 27 2015 - 10:31:53 PDT)
[AMBER] cpptraj V14.25 issues with old Amber topology files (Amber 11)
(Mon Apr 27 2015 - 07:11:32 PDT)
[AMBER] the vectors of the moment of inertia protein
(Sat Apr 25 2015 - 09:07:07 PDT)
Re: [AMBER] cpptraj writting box coordinates issue
(Mon Apr 20 2015 - 08:24:43 PDT)
[AMBER] cpptraj writting box coordinates issue
(Mon Apr 20 2015 - 08:00:09 PDT)
chemjxn
[AMBER] parameterization Zn2+ with MCPB
(Mon Apr 27 2015 - 00:42:48 PDT)
[AMBER] mcpb problem
(Sat Apr 25 2015 - 01:17:20 PDT)
[AMBER] mcpb problem
(Wed Apr 22 2015 - 21:12:08 PDT)
[AMBER] MCPB subprogram problem
(Tue Mar 31 2015 - 23:41:50 PDT)
[AMBER] 发送给你的文件
(Tue Mar 31 2015 - 23:29:00 PDT)
Chris Gaughan
[AMBER] barosts command in amber 12
(Sun Apr 05 2015 - 11:04:52 PDT)
Christina Bergonzo
Re: [AMBER] Writing out restart files
(Thu Apr 16 2015 - 07:27:33 PDT)
Daniel Roe
Re: [AMBER] cpptraj V14.25 issues with old Amber topology files (Amber 11)
(Mon Apr 27 2015 - 10:35:54 PDT)
Re: [AMBER] cpptraj V14.25 issues with old Amber topology files (Amber 11)
(Mon Apr 27 2015 - 08:36:43 PDT)
Re: [AMBER] Calculating Cp values from NPT simulations using ptraj
(Tue Apr 21 2015 - 11:01:18 PDT)
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 06:54:19 PDT)
Re: [AMBER] cpptraj writting box coordinates issue
(Mon Apr 20 2015 - 08:04:46 PDT)
Re: [AMBER] Evaluating hydrogen boding lifetime
(Fri Apr 17 2015 - 07:12:07 PDT)
Re: [AMBER] Carbon nanotube simulation
(Fri Apr 17 2015 - 07:00:46 PDT)
Re: [AMBER] deletion of H atoms for pdb file
(Thu Apr 16 2015 - 12:38:54 PDT)
Re: [AMBER] Diffusion constant calculation
(Thu Apr 16 2015 - 07:44:41 PDT)
Re: [AMBER] Evaluating hydrogen boding lifetime
(Thu Apr 16 2015 - 07:41:21 PDT)
Re: [AMBER] Writing out restart files
(Thu Apr 16 2015 - 07:30:47 PDT)
Re: [AMBER] Diffusion constant calculation
(Wed Apr 15 2015 - 10:13:01 PDT)
Re: [AMBER] Deletion of H atoms from pdb file used for MD simulations
(Wed Apr 15 2015 - 08:02:22 PDT)
Re: [AMBER] The influence of parameters in md.in when restart a MD (from rst file)
(Wed Apr 15 2015 - 07:30:46 PDT)
Re: [AMBER] Community network analysis for the Amber trajectories
(Tue Apr 14 2015 - 08:59:51 PDT)
Re: [AMBER] Diffusion constant calculation
(Tue Apr 14 2015 - 07:06:05 PDT)
Re: [AMBER] hydrogen bond analysis using cpptraj in amber tools 14
(Tue Apr 14 2015 - 06:56:04 PDT)
Re: [AMBER] is it possible to output the trajectory of the center of mass of the residues?
(Mon Apr 13 2015 - 09:22:58 PDT)
Re: [AMBER] Does atomicflut byres report the fluctuations of the residue CM?
(Mon Apr 13 2015 - 08:49:11 PDT)
Re: [AMBER] Diffusion constant calculation
(Mon Apr 13 2015 - 08:42:35 PDT)
Re: [AMBER] cpptraj write data from runanalysis
(Fri Apr 10 2015 - 13:29:14 PDT)
Re: [AMBER] MMPBSA error
(Thu Apr 09 2015 - 07:16:41 PDT)
Re: [AMBER] Possible bug in nativecontacts command of cpptraj (v14)?
(Tue Apr 07 2015 - 11:52:45 PDT)
Re: [AMBER] Calculating protein center of mass (COM) using vector command
(Tue Apr 07 2015 - 08:30:53 PDT)
Re: [AMBER] error generating P450 prmtop incrd file
(Tue Apr 07 2015 - 07:27:11 PDT)
Re: [AMBER] Restrained MD
(Tue Apr 07 2015 - 07:23:25 PDT)
Re: [AMBER] Radial distribution function (RDF) for sugars in disaccharides
(Tue Apr 07 2015 - 07:19:08 PDT)
Re: [AMBER] MMPBSA error
(Mon Apr 06 2015 - 20:51:00 PDT)
Re: [AMBER] Lipid Conversion from Charmm PDB to Lipid14 PDB
(Thu Apr 02 2015 - 12:39:35 PDT)
Re: [AMBER] MMPBSA error
(Wed Apr 01 2015 - 07:13:29 PDT)
Re: [AMBER] New Force Field
(Wed Apr 01 2015 - 07:10:22 PDT)
David A Case
Re: [AMBER] STRUCTURAL CHANGE AFTER HEATING
(Thu Apr 30 2015 - 07:32:10 PDT)
Re: [AMBER] Query about microsecond long simulation
(Thu Apr 30 2015 - 05:04:13 PDT)
Re: [AMBER] Query about microsecond long simulation
(Thu Apr 30 2015 - 04:48:00 PDT)
Re: [AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 12:55:18 PDT)
Re: [AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 08:31:23 PDT)
Re: [AMBER] pdbamb gives wrong resnumber
(Tue Apr 28 2015 - 11:49:16 PDT)
Re: [AMBER] error in amber installation
(Tue Apr 28 2015 - 05:14:30 PDT)
Re: [AMBER] Nmode analysis calculation problem for Implicit simulation.
(Tue Apr 28 2015 - 05:09:51 PDT)
Re: [AMBER] Segmentation fault in AmberTool 14.25
(Tue Apr 28 2015 - 05:05:30 PDT)
Re: [AMBER] Fwd: Tleap atom type - template not found
(Tue Apr 28 2015 - 04:59:24 PDT)
Re: [AMBER] Is there NHE cap in the ff02 library files?
(Tue Apr 28 2015 - 04:56:20 PDT)
Re: [AMBER] how to run non standard simulation
(Mon Apr 27 2015 - 14:51:35 PDT)
Re: [AMBER] Segmentation fault in AmberTool 14.25
(Mon Apr 27 2015 - 05:11:33 PDT)
Re: [AMBER] regarding .prmtop file generation
(Mon Apr 27 2015 - 04:58:54 PDT)
Re: [AMBER] Regarding running to independent simulations
(Sat Apr 25 2015 - 07:05:30 PDT)
Re: [AMBER] Simulations at High temperature (425K)
(Fri Apr 24 2015 - 08:14:42 PDT)
Re: [AMBER] Arrangement of molecules in 3D packed state
(Thu Apr 23 2015 - 07:31:08 PDT)
Re: [AMBER] Arrangement of molecules in 3D packed state
(Wed Apr 22 2015 - 08:13:29 PDT)
Re: [AMBER] ATTN needs revision
(Wed Apr 22 2015 - 08:08:52 PDT)
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 08:07:02 PDT)
Re: [AMBER] REGARDING ENERGY MINIMISATION
(Wed Apr 15 2015 - 06:15:54 PDT)
Re: [AMBER] Restart file with velocity
(Tue Apr 14 2015 - 04:13:29 PDT)
Re: [AMBER] error in minimization
(Mon Apr 13 2015 - 04:25:04 PDT)
Re: [AMBER] error in minimization
(Sun Apr 12 2015 - 19:52:55 PDT)
Re: [AMBER] Arrangement of molecules in 3D packed state
(Sun Apr 12 2015 - 19:50:34 PDT)
Re: [AMBER] a question for hydrocarbons simulation using amber FF
(Sun Apr 12 2015 - 06:18:19 PDT)
Re: [AMBER] Error
(Sun Apr 12 2015 - 06:14:12 PDT)
Re: [AMBER] error in minimization
(Sun Apr 12 2015 - 06:06:58 PDT)
Re: [AMBER] a question for hydrocarbons simulation using amber FF
(Sun Apr 12 2015 - 06:04:14 PDT)
Re: [AMBER] intercalations
(Sun Apr 12 2015 - 05:57:54 PDT)
Re: [AMBER] larger bonds between protein atoms
(Thu Apr 09 2015 - 05:00:56 PDT)
Re: [AMBER] COM distance restraints and pmemd.cuda
(Tue Apr 07 2015 - 10:39:24 PDT)
Re: [AMBER] error generating P450 prmtop incrd file
(Tue Apr 07 2015 - 05:10:39 PDT)
Re: [AMBER] typo error in the amber14 manual
(Tue Apr 07 2015 - 04:56:14 PDT)
Re: [AMBER] Question Regarding reduce function of Antechamber
(Sun Apr 05 2015 - 18:13:14 PDT)
Re: [AMBER] Question Regarding reduce function of Antechamber
(Sun Apr 05 2015 - 04:22:40 PDT)
Dhiraj Srivastava
[AMBER] Amino acid as ligand
(Sat Apr 11 2015 - 20:06:20 PDT)
Dr. Robert Molt Jr.
Re: [AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 15:05:41 PDT)
Emilio Angelina
Re: [AMBER] Unsupported CUDA version 7.0 detected.
(Fri Apr 10 2015 - 14:33:44 PDT)
[AMBER] Unsupported CUDA version 7.0 detected.
(Fri Apr 10 2015 - 13:38:09 PDT)
Re: [AMBER] Boltzman Weights from MD trajectory
(Tue Apr 07 2015 - 13:22:24 PDT)
[AMBER] Boltzman Weights from MD trajectory
(Tue Apr 07 2015 - 11:33:33 PDT)
filip fratev
Re: [AMBER] Any timeline for TI on GPU's?
(Wed Apr 22 2015 - 11:01:45 PDT)
Francesco Gentile
Re: [AMBER] MMPBSA problem with calcium
(Thu Apr 30 2015 - 14:56:18 PDT)
[AMBER] MMPBSA problem with calcium
(Wed Apr 29 2015 - 11:15:36 PDT)
FyD
Re: [AMBER] FW: TLEAP Fatal Error
(Thu Apr 09 2015 - 00:00:32 PDT)
Re: [AMBER] query
(Mon Apr 06 2015 - 23:09:21 PDT)
Re: [AMBER] Build long polymer from the monomer using Xleap
(Mon Apr 06 2015 - 22:52:51 PDT)
Re: [AMBER] Multiple MEPs option in R.E.D tools
(Thu Apr 02 2015 - 00:46:58 PDT)
Re: [AMBER] Multiple MEPs option in R.E.D tools
(Thu Apr 02 2015 - 00:30:47 PDT)
Gard Nelson
Re: [AMBER] cpptraj write data from runanalysis
(Fri Apr 10 2015 - 15:25:08 PDT)
[AMBER] cpptraj write data from runanalysis
(Fri Apr 10 2015 - 11:29:45 PDT)
George Green
Re: [AMBER] Calculating protein center of mass (COM) using vector command
(Tue Apr 07 2015 - 08:39:38 PDT)
[AMBER] Calculating protein center of mass (COM) using vector command
(Tue Apr 07 2015 - 07:51:11 PDT)
George Tzotzos
Re: [AMBER] In MMPBSY.py , how to set interval value when large conformation change ?
(Mon Apr 20 2015 - 11:20:36 PDT)
gepaula.web.de
[AMBER] Writing out restart files
(Thu Apr 16 2015 - 07:14:21 PDT)
Gerald Monard
Re: [AMBER] Force Field Parameters for Monoamino Acids at acidic and basic conditions?
(Fri Apr 10 2015 - 00:25:31 PDT)
Re: [AMBER] error **** in output file with wrapping first molecule on GPU
(Fri Apr 03 2015 - 14:50:15 PDT)
Re: [AMBER] How to obtain potential energy using mdcrd trajectories in AMBER12
(Fri Apr 03 2015 - 08:44:24 PDT)
Re: [AMBER] error **** in output file with wrapping first molecule on GPU
(Fri Apr 03 2015 - 05:15:53 PDT)
Re: [AMBER] EGB and ESCF might not be converged if the net charge not equal to 0 in the QM/MM-GBSA
(Thu Apr 02 2015 - 01:42:11 PDT)
Re: [AMBER] error **** in output file with wrapping first molecule on GPU
(Thu Apr 02 2015 - 00:13:44 PDT)
Gulsevin,Alican
[AMBER] Sander QMMM Bomb Problem
(Thu Apr 02 2015 - 08:52:30 PDT)
Gustavo Seabra
Re: [AMBER] Query about microsecond long simulation
(Thu Apr 30 2015 - 03:51:00 PDT)
Gözde YALÇIN
Re: [AMBER] charmmlipid2amber.py error
(Wed Apr 29 2015 - 00:03:40 PDT)
[AMBER] charmmlipid2amber.py error
(Sat Apr 25 2015 - 11:39:33 PDT)
[AMBER] charmmlipid2amber2.py error
(Sat Apr 25 2015 - 04:35:51 PDT)
Hai Nguyen
Re: [AMBER] install Amber 11 and AmberTools 1.5 on CentoS 6.3
(Wed Apr 22 2015 - 10:49:57 PDT)
Hannes Loeffler
Re: [AMBER] Quasi-harmonic Approximation Using a Trajectory Stripped of Hydrogens
(Thu Apr 30 2015 - 03:15:19 PDT)
Re: [AMBER] Antechamber Algorithm for Atom Type
(Tue Apr 28 2015 - 07:08:23 PDT)
Re: [AMBER] Antechamber Algorithm for Atom Type
(Tue Apr 28 2015 - 07:06:14 PDT)
Re: [AMBER] Antechamber Algorithm for Atom Type
(Tue Apr 28 2015 - 06:29:57 PDT)
Re: [AMBER] Quasi-harmonic Approximation Using a Trajectory Stripped of Hydrogens
(Tue Apr 28 2015 - 04:19:54 PDT)
Re: [AMBER] Batch leap error!
(Fri Apr 17 2015 - 08:52:22 PDT)
Re: [AMBER] Batch leap error!
(Fri Apr 17 2015 - 06:31:29 PDT)
Re: [AMBER] Batch leap error!
(Fri Apr 17 2015 - 04:17:59 PDT)
[AMBER] ligand-solvent interaction energy
(Fri Apr 17 2015 - 02:23:41 PDT)
Re: [AMBER] Deletion of H atoms from pdb file used for MD simulations
(Wed Apr 15 2015 - 03:49:09 PDT)
Re: [AMBER] Free energy calculation of ligand binding energy: Thermodynamic integration - long range dispersion correction - recalculate trajectory with different potential
(Thu Apr 02 2015 - 04:31:11 PDT)
Re: [AMBER] Multiple MEPs option in R.E.D tools
(Wed Apr 01 2015 - 01:58:34 PDT)
hannes.loeffler.stfc.ac.uk
Re: [AMBER] Antechamber Algorithm for Atom Type
(Mon Apr 27 2015 - 23:21:32 PDT)
Re: [AMBER] Free energy calculation of ligand binding energy: Thermodynamic integration - pmemd - single topology - vdw
(Sat Apr 25 2015 - 07:46:20 PDT)
Re: [AMBER] Free energy calculation of ligand binding energy: Thermodynamic integration - pmemd - single topology - vdw
(Thu Apr 23 2015 - 09:04:34 PDT)
Re: [AMBER] Batch leap error!
(Fri Apr 17 2015 - 05:07:47 PDT)
Re: [AMBER] deletion of H atoms for pdb file
(Thu Apr 16 2015 - 12:16:34 PDT)
Re: [AMBER] a question for hydrocarbons simulation using amber FF
(Sun Apr 12 2015 - 03:50:24 PDT)
Hector A. Baldoni
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 07:24:10 PDT)
Re: [AMBER] Batch leap error!
(Fri Apr 17 2015 - 09:16:25 PDT)
Himanshu Joshi
Re: [AMBER] AMBER14 pmemd.cuda.MPI : *** in mdout files
(Tue Mar 31 2015 - 21:13:02 PDT)
Re: [AMBER] AMBER14 pmemd.cuda.MPI : *** in mdout files
(Tue Mar 31 2015 - 20:32:38 PDT)
IBRAHIM M ABDELRADY
Re: [AMBER] FW: amber14 errors
(Thu Apr 02 2015 - 12:42:22 PDT)
[AMBER] FW: amber14 errors
(Thu Apr 02 2015 - 11:16:28 PDT)
Ilyas Yildirim
Re: [AMBER] COM distance restraints and pmemd.cuda
(Tue Apr 07 2015 - 15:30:26 PDT)
[AMBER] COM distance restraints and pmemd.cuda
(Tue Apr 07 2015 - 10:12:51 PDT)
jacob wick
[AMBER] DNA partial charges in Amber library
(Thu Apr 23 2015 - 22:23:08 PDT)
Re: [AMBER] Arrangement of molecules in 3D packed state
(Thu Apr 23 2015 - 10:46:39 PDT)
Re: [AMBER] Arrangement of molecules in 3D packed state
(Thu Apr 23 2015 - 10:43:11 PDT)
Re: [AMBER] Arrangement of molecules in 3D packed state
(Thu Apr 23 2015 - 01:59:59 PDT)
Re: [AMBER] Arrangement of molecules in 3D packed state
(Tue Apr 21 2015 - 01:16:25 PDT)
[AMBER] Arrangement of molecules in 3D packed state
(Sun Apr 12 2015 - 11:30:25 PDT)
James Maier
Re: [AMBER] New Force Field
(Wed Apr 01 2015 - 07:43:55 PDT)
James Starlight
Re: [AMBER] Community network analysis for the Amber trajectories
(Wed Apr 15 2015 - 05:39:03 PDT)
Re: [AMBER] Community network analysis for the Amber trajectories
(Tue Apr 14 2015 - 11:32:04 PDT)
[AMBER] Community network analysis for the Amber trajectories
(Tue Apr 14 2015 - 07:25:27 PDT)
[AMBER] Mmgbsa decomposition
(Mon Apr 13 2015 - 01:19:01 PDT)
Re: [AMBER] Build long polymer from the monomer using Xleap
(Fri Apr 10 2015 - 04:40:12 PDT)
[AMBER] Visualization of the MMGBSA per-residue decomposition
(Wed Apr 08 2015 - 09:43:02 PDT)
Re: [AMBER] Restrained MD
(Tue Apr 07 2015 - 07:44:45 PDT)
Re: [AMBER] mmbsa.py issue with the complex.parmtop
(Tue Apr 07 2015 - 05:19:17 PDT)
Re: [AMBER] Restrained MD
(Tue Apr 07 2015 - 05:16:39 PDT)
Re: [AMBER] mmbsa.py issue with the complex.parmtop
(Mon Apr 06 2015 - 07:58:23 PDT)
Re: [AMBER] mmbsa.py issue with the complex.parmtop
(Mon Apr 06 2015 - 07:13:47 PDT)
Re: [AMBER] mmbsa.py issue with the complex.parmtop
(Mon Apr 06 2015 - 06:12:17 PDT)
Re: [AMBER] mmbsa.py issue with the complex.parmtop
(Fri Apr 03 2015 - 05:28:48 PDT)
Re: [AMBER] mmbsa.py issue with the complex.parmtop
(Fri Apr 03 2015 - 04:53:46 PDT)
Re: [AMBER] mmbsa.py issue with the complex.parmtop
(Thu Apr 02 2015 - 08:27:39 PDT)
Re: [AMBER] mmbsa.py issue with the complex.parmtop
(Thu Apr 02 2015 - 08:08:27 PDT)
Re: [AMBER] Build long polymer from the monomer using Xleap
(Thu Apr 02 2015 - 07:08:54 PDT)
[AMBER] mmbsa.py issue with the complex.parmtop
(Thu Apr 02 2015 - 06:17:05 PDT)
[AMBER] Build long polymer from the monomer using Xleap
(Thu Apr 02 2015 - 05:41:24 PDT)
Re: [AMBER] Restrained MD
(Thu Apr 02 2015 - 05:38:02 PDT)
Jason Swails
Re: [AMBER] MMPBSA problem with calcium
(Thu Apr 30 2015 - 15:38:29 PDT)
Re: [AMBER] Query about microsecond long simulation
(Thu Apr 30 2015 - 11:19:07 PDT)
Re: [AMBER] restraining in xz coordinates only
(Thu Apr 30 2015 - 11:12:51 PDT)
Re: [AMBER] Query about microsecond long simulation
(Thu Apr 30 2015 - 11:00:00 PDT)
Re: [AMBER] Query about microsecond long simulation
(Thu Apr 30 2015 - 10:45:04 PDT)
Re: [AMBER] Query about microsecond long simulation
(Thu Apr 30 2015 - 10:40:15 PDT)
Re: [AMBER] MMPBSA problem with calcium
(Thu Apr 30 2015 - 09:38:47 PDT)
Re: [AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 07:48:31 PDT)
Re: [AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 06:57:16 PDT)
Re: [AMBER] The question about how to restart REMD simulation in AMBER12 and Langavin dynamics
(Wed Apr 29 2015 - 05:28:06 PDT)
Re: [AMBER] Quasi-harmonic Approximation Using a Trajectory Stripped of Hydrogens
(Tue Apr 28 2015 - 18:40:03 PDT)
Re: [AMBER] EGB and EEL Values in MM-GBSA -reg
(Tue Apr 28 2015 - 11:54:37 PDT)
Re: [AMBER] pdbamb gives wrong resnumber
(Tue Apr 28 2015 - 10:39:46 PDT)
Re: [AMBER] Antechamber Algorithm for Atom Type
(Tue Apr 28 2015 - 07:14:41 PDT)
Re: [AMBER] Antechamber Algorithm for Atom Type
(Tue Apr 28 2015 - 06:56:02 PDT)
Re: [AMBER] cpptraj V14.25 issues with old Amber topology files (Amber 11)
(Mon Apr 27 2015 - 08:22:29 PDT)
Re: [AMBER] Questions about T-REMD
(Mon Apr 27 2015 - 06:38:52 PDT)
Re: [AMBER] mpirun error
(Sun Apr 26 2015 - 16:19:05 PDT)
Re: [AMBER] problem with CHAMBER
(Sat Apr 25 2015 - 13:52:48 PDT)
Re: [AMBER] charmmlipid2amber.py error
(Sat Apr 25 2015 - 13:48:03 PDT)
Re: [AMBER] close contacts in equilibrated structure
(Sat Apr 25 2015 - 13:40:35 PDT)
Re: [AMBER] segmentation fault in AmberTool 14.25
(Sat Apr 25 2015 - 13:36:10 PDT)
Re: [AMBER] regarding .prmtop file generation
(Sat Apr 25 2015 - 13:33:10 PDT)
Re: [AMBER] Error: Unable to run flex; this is required for NAB and antechamber Please check your PATH, or install the program
(Fri Apr 24 2015 - 04:59:14 PDT)
Re: [AMBER] Error: Unable to run flex; this is required for NAB and antechamber Please check your PATH, or install the program
(Thu Apr 23 2015 - 12:19:45 PDT)
Re: [AMBER] Error: Unable to run flex; this is required for NAB and antechamber Please check your PATH, or install the program
(Thu Apr 23 2015 - 11:26:29 PDT)
Re: [AMBER] Error: Unable to run flex; this is required for NAB and antechamber Please check your PATH, or install the program
(Thu Apr 23 2015 - 05:06:05 PDT)
Re: [AMBER] Error: Unable to run flex; this is required for NAB and antechamber Please check your PATH, or install the program
(Thu Apr 23 2015 - 03:59:32 PDT)
Re: [AMBER] MMBP(GB)SA free energy decomposition error: sander failed with prmtop
(Thu Apr 23 2015 - 03:58:09 PDT)
Re: [AMBER] Error with quasi-harmonic MMPBSA.py calculations
(Thu Apr 23 2015 - 03:55:19 PDT)
Re: [AMBER] AMBER 14 installation problem
(Thu Apr 23 2015 - 03:50:59 PDT)
Re: [AMBER] CENTOS 6.6 :ERROR - INSTALLATION OF AMBERTOOLS14/AMBER14
(Thu Apr 23 2015 - 03:42:56 PDT)
Re: [AMBER] install Amber 11 and AmberTools 1.5 on CentoS 6.3
(Wed Apr 22 2015 - 11:08:15 PDT)
Re: [AMBER] install Amber 11 and AmberTools 1.5 on CentoS 6.3
(Wed Apr 22 2015 - 04:05:50 PDT)
Re: [AMBER] In MMPBSY.py , how to set interval value when large conformation change ?
(Wed Apr 22 2015 - 03:59:58 PDT)
Re: [AMBER] install Amber 11 and AmberTools 1.5 on CentoS 6.3
(Tue Apr 21 2015 - 12:23:12 PDT)
Re: [AMBER] The error occurs when I set radiopt =1 in MMPBSA.py
(Tue Apr 21 2015 - 10:39:17 PDT)
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 10:33:21 PDT)
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 08:04:10 PDT)
Re: [AMBER] In MMPBSY.py , how to set interval value when large conformation change ?
(Mon Apr 20 2015 - 11:47:27 PDT)
Re: [AMBER] In MMPBSY.py , how to set interval value when large conformation change ?
(Mon Apr 20 2015 - 06:09:45 PDT)
Re: [AMBER] regarding .prmtop file generation
(Mon Apr 20 2015 - 06:01:06 PDT)
Re: [AMBER] PCA analysis
(Mon Apr 20 2015 - 05:54:29 PDT)
Re: [AMBER] One chain of protein going out of box
(Mon Apr 20 2015 - 05:37:02 PDT)
Re: [AMBER] Problem in running with steered MD
(Mon Apr 20 2015 - 05:34:13 PDT)
Re: [AMBER] How to resolve the problem when amber14 configured with cuda 6.5
(Sun Apr 19 2015 - 12:29:51 PDT)
Re: [AMBER] How to resolve the problem when amber14 configured with cuda 6.5
(Sat Apr 18 2015 - 04:48:50 PDT)
Re: [AMBER] Error with quasi-harmonic MMPBSA.py calculations
(Fri Apr 17 2015 - 08:43:03 PDT)
Re: [AMBER] Batch leap error!
(Fri Apr 17 2015 - 06:42:29 PDT)
Re: [AMBER] ligand-solvent interaction energy
(Fri Apr 17 2015 - 05:34:15 PDT)
Re: [AMBER] Batch leap error!
(Fri Apr 17 2015 - 05:12:29 PDT)
Re: [AMBER] Batch leap error!
(Fri Apr 17 2015 - 05:07:17 PDT)
Re: [AMBER] NMode Analysis Using Truncated Trajectory
(Fri Apr 17 2015 - 05:00:39 PDT)
Re: [AMBER] Alanin scanning MMGBSA.py error: TypeError: not all arguments converted during string formatting
(Fri Apr 17 2015 - 04:56:36 PDT)
Re: [AMBER] NMode Analysis Using Truncated Trajectory
(Thu Apr 16 2015 - 13:10:07 PDT)
Re: [AMBER] all in one pc for MD simulation calculations
(Thu Apr 16 2015 - 07:57:55 PDT)
Re: [AMBER] Writing out restart files
(Thu Apr 16 2015 - 07:20:43 PDT)
Re: [AMBER] Error with quasi-harmonic MMPBSA.py calculations
(Thu Apr 16 2015 - 06:40:26 PDT)
Re: [AMBER] Alanin scanning MMGBSA.py error: TypeError: not all arguments converted during string formatting
(Thu Apr 16 2015 - 06:33:00 PDT)
Re: [AMBER] Deletion of H atoms from pdb file used for MD simulations
(Wed Apr 15 2015 - 06:05:11 PDT)
Re: [AMBER] REGARDING ENERGY MINIMISATION
(Wed Apr 15 2015 - 06:03:49 PDT)
Re: [AMBER] error in minimization
(Tue Apr 14 2015 - 10:03:01 PDT)
Re: [AMBER] error in minimization
(Tue Apr 14 2015 - 09:01:14 PDT)
Re: [AMBER] How to use the mmpbsa.py to calcualte the free energy of a modified protein ?
(Tue Apr 14 2015 - 07:31:28 PDT)
Re: [AMBER] REGARDING ENERGY MINIMISATION
(Tue Apr 14 2015 - 07:16:10 PDT)
Re: [AMBER] MMPBSA.py error:length mismatch in energy vectors
(Tue Apr 14 2015 - 07:10:32 PDT)
Re: [AMBER] error in minimization
(Mon Apr 13 2015 - 10:26:09 PDT)
Re: [AMBER] error in minimization
(Mon Apr 13 2015 - 10:11:01 PDT)
Re: [AMBER] Charmm force field parameters in Amber
(Mon Apr 13 2015 - 06:47:47 PDT)
Re: [AMBER] error in minimization
(Mon Apr 13 2015 - 06:43:21 PDT)
Re: [AMBER] Quasi-harmonic Entropy Calculated using MMPBSA.py
(Sat Apr 11 2015 - 21:10:22 PDT)
Re: [AMBER] Amino acid as ligand
(Sat Apr 11 2015 - 21:01:58 PDT)
Re: [AMBER] Problem with MMPBSA.py.MPI for nmode
(Sat Apr 11 2015 - 20:59:12 PDT)
Re: [AMBER] Unsupported CUDA version 7.0 detected.
(Fri Apr 10 2015 - 14:29:54 PDT)
Re: [AMBER] MMPBSA on NAMD DCD Trajectories
(Fri Apr 10 2015 - 04:42:35 PDT)
Re: [AMBER] MMPBSA error
(Fri Apr 10 2015 - 03:14:26 PDT)
Re: [AMBER] Force Field Parameters for Monoamino Acids at acidic and basic conditions?
(Fri Apr 10 2015 - 03:12:25 PDT)
Re: [AMBER] How to use the mmpbsa.py to calcualte the free energy of a modified protein ?
(Fri Apr 10 2015 - 03:09:31 PDT)
Re: [AMBER] MMPBSA error
(Thu Apr 09 2015 - 04:32:40 PDT)
Re: [AMBER] larger bonds between protein atoms
(Thu Apr 09 2015 - 04:24:30 PDT)
Re: [AMBER] xleap Menu bar problems
(Thu Apr 09 2015 - 04:18:33 PDT)
Re: [AMBER] error generating P450 prmtop incrd file
(Wed Apr 08 2015 - 10:08:58 PDT)
Re: [AMBER] error generating P450 prmtop incrd file
(Wed Apr 08 2015 - 10:06:43 PDT)
Re: [AMBER] Energy drift issue
(Tue Apr 07 2015 - 13:09:14 PDT)
Re: [AMBER] Boltzman Weights from MD trajectory
(Tue Apr 07 2015 - 11:41:36 PDT)
Re: [AMBER] FW: TLEAP Fatal Error
(Tue Apr 07 2015 - 08:40:44 PDT)
Re: [AMBER] MMPBSA.py.MPI Installation Failure
(Tue Apr 07 2015 - 08:36:40 PDT)
Re: [AMBER] error generating P450 prmtop incrd file
(Tue Apr 07 2015 - 06:01:29 PDT)
Re: [AMBER] REGARDING ATOM TYPE ERROR
(Tue Apr 07 2015 - 05:01:56 PDT)
Re: [AMBER] MMPBSA error
(Mon Apr 06 2015 - 20:30:39 PDT)
Re: [AMBER] barosts command in amber 12
(Sun Apr 05 2015 - 17:33:52 PDT)
Re: [AMBER] How to obtain potential energy using mdcrd trajectories in AMBER12
(Fri Apr 03 2015 - 07:07:47 PDT)
Re: [AMBER] How to obtain potential energy using mdcrd trajectories in AMBER12
(Thu Apr 02 2015 - 13:12:09 PDT)
Re: [AMBER] FW: amber14 errors
(Thu Apr 02 2015 - 13:08:49 PDT)
Re: [AMBER] FW: amber14 errors
(Thu Apr 02 2015 - 11:59:19 PDT)
Re: [AMBER] error **** in output file with wrapping first molecule on GPU
(Thu Apr 02 2015 - 11:35:14 PDT)
Re: [AMBER] error **** in output file with wrapping first molecule on GPU
(Thu Apr 02 2015 - 10:27:21 PDT)
Re: [AMBER] Error while running MMPBSA
(Thu Apr 02 2015 - 05:40:32 PDT)
Re: [AMBER] Help regarding appropriate analysis for correlated motion using cpptraj
(Wed Apr 01 2015 - 07:49:17 PDT)
Re: [AMBER] Help regarding appropriate analysis for correlated motion using cpptraj
(Wed Apr 01 2015 - 06:04:26 PDT)
Re: [AMBER] New Force Field
(Wed Apr 01 2015 - 05:36:25 PDT)
[AMBER] New Force Field
(Wed Apr 01 2015 - 04:12:07 PDT)
Jeffrey Teillet
[AMBER] AMBER parametrization questions
(Mon Apr 13 2015 - 06:20:11 PDT)
Jia Xu
Re: [AMBER] mcpb problem
(Sat Apr 25 2015 - 08:40:30 PDT)
Jiri Sponer
Re: [AMBER] New Force Field
(Wed Apr 01 2015 - 05:58:18 PDT)
Jonathan Gough
Re: [AMBER] Query about microsecond long simulation
(Thu Apr 30 2015 - 11:05:03 PDT)
Re: [AMBER] Query about microsecond long simulation
(Thu Apr 30 2015 - 10:55:38 PDT)
Jorgen Simonsen
[AMBER] dispersion for QM/MM missing parameters
(Wed Apr 29 2015 - 00:17:16 PDT)
Jose Borreguero
Re: [AMBER] is it possible to output the trajectory of the center of mass of the residues?
(Mon Apr 13 2015 - 10:22:29 PDT)
Re: [AMBER] Does atomicflut byres report the fluctuations of the residue CM?
(Mon Apr 13 2015 - 09:01:59 PDT)
[AMBER] is it possible to output the trajectory of the center of mass of the residues?
(Mon Apr 13 2015 - 07:05:51 PDT)
[AMBER] Does atomicflut byres report the fluctuations of the residue CM?
(Fri Apr 10 2015 - 15:44:38 PDT)
Josh Berryman
Re: [AMBER] Quasi-harmonic Approximation Using a Trajectory Stripped of Hydrogens
(Tue Apr 28 2015 - 03:51:46 PDT)
Karl Kirschner
Re: [AMBER] Carbon nanotube simulation
(Fri Apr 17 2015 - 00:32:56 PDT)
Re: [AMBER] Organic solvent from imported molecule (e.g. : nitric acid)
(Fri Apr 10 2015 - 00:13:02 PDT)
Re: [AMBER] Build long polymer from the monomer using Xleap
(Thu Apr 02 2015 - 07:39:46 PDT)
Re: [AMBER] Build long polymer from the monomer using Xleap
(Thu Apr 02 2015 - 06:23:42 PDT)
Kenneth Huang
[AMBER] Regarding running to independent simulations
(Sat Apr 25 2015 - 05:12:27 PDT)
Re: [AMBER] The error occurs when I set radiopt =1 in MMPBSA.py
(Tue Apr 21 2015 - 10:22:25 PDT)
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 09:54:03 PDT)
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 05:57:32 PDT)
Re: [AMBER] re： Bad atom Type in MMPBSA.py
(Mon Apr 13 2015 - 10:40:01 PDT)
Re: [AMBER] Bad atom Type in MMPBSA.py
(Sun Apr 12 2015 - 12:15:48 PDT)
Re: [AMBER] Problem with MMPBSA.py.MPI for nmode
(Sat Apr 11 2015 - 15:35:04 PDT)
Re: [AMBER] Bad atom Type in MMPBSA.py
(Sat Apr 11 2015 - 11:17:42 PDT)
[AMBER] Problem with MMPBSA.py.MPI for nmode
(Fri Apr 10 2015 - 09:36:04 PDT)
Re: [AMBER] Problem with MMPBSA.py.MPI for nmode
(Thu Apr 09 2015 - 08:19:19 PDT)
Re: [AMBER] MMBP(GB)SA free energy decomposition error: sander failed with prmtop
(Wed Apr 08 2015 - 21:59:13 PDT)
Re: [AMBER] mmbsa.py issue with the complex.parmtop
(Mon Apr 06 2015 - 08:25:55 PDT)
Re: [AMBER] mmbsa.py issue with the complex.parmtop
(Mon Apr 06 2015 - 07:23:25 PDT)
Re: [AMBER] mmbsa.py issue with the complex.parmtop
(Mon Apr 06 2015 - 07:19:00 PDT)
Re: [AMBER] mmbsa.py issue with the complex.parmtop
(Fri Apr 03 2015 - 08:22:25 PDT)
Re: [AMBER] Error while running MMPBSA
(Fri Apr 03 2015 - 08:01:26 PDT)
Re: [AMBER] mmbsa.py issue with the complex.parmtop
(Thu Apr 02 2015 - 08:38:20 PDT)
Re: [AMBER] Error while running MMPBSA
(Thu Apr 02 2015 - 08:25:34 PDT)
Re: [AMBER] Error while running MMPBSA
(Thu Apr 02 2015 - 07:57:33 PDT)
[AMBER] mmbsa.py issue with the complex.parmtop
(Thu Apr 02 2015 - 07:50:54 PDT)
Kshatresh Dutta Dubey
Re: [AMBER] Help regarding appropriate analysis for correlated motion using cpptraj
(Wed Apr 01 2015 - 07:59:14 PDT)
Re: [AMBER] Help regarding appropriate analysis for correlated motion using cpptraj
(Wed Apr 01 2015 - 07:42:50 PDT)
Laura Tociu
Re: [AMBER] Quasi-harmonic Approximation Using a Trajectory Stripped of Hydrogens
(Tue Apr 28 2015 - 21:44:57 PDT)
Re: [AMBER] Quasi-harmonic Approximation Using a Trajectory Stripped of Hydrogens
(Tue Apr 28 2015 - 12:40:06 PDT)
[AMBER] Quasi-harmonic Approximation Using a Trajectory Stripped of Hydrogens
(Sun Apr 26 2015 - 20:35:08 PDT)
Re: [AMBER] NMode Analysis Using Truncated Trajectory
(Fri Apr 17 2015 - 05:47:40 PDT)
Re: [AMBER] NMode Analysis Using Truncated Trajectory
(Thu Apr 16 2015 - 20:52:06 PDT)
[AMBER] NMode Analysis Using Truncated Trajectory
(Thu Apr 16 2015 - 11:53:19 PDT)
[AMBER] Quasi-harmonic Entropy Calculated using MMPBSA.py
(Fri Apr 10 2015 - 19:56:48 PDT)
Re: [AMBER] MMPBSA.py.MPI Installation Failure
(Wed Apr 08 2015 - 22:22:52 PDT)
[AMBER] MMPBSA.py.MPI Installation Failure
(Sat Apr 04 2015 - 11:34:04 PDT)
lipengfei
[AMBER] Questions about T-REMD
(Mon Apr 27 2015 - 05:30:45 PDT)
loic etheve
[AMBER] Restart file with velocity
(Tue Apr 14 2015 - 03:40:34 PDT)
Marc van der Kamp
Re: [AMBER] a question for hydrocarbons simulation using amber FF
(Sun Apr 12 2015 - 04:12:14 PDT)
Mark Williamson
Re: [AMBER] error generating P450 prmtop incrd file
(Tue Apr 07 2015 - 07:29:00 PDT)
maryam azimzadehirani
Re: [AMBER] MMBP(GB)SA free energy decomposition error: sander failed with prmtop
(Thu Apr 23 2015 - 00:22:27 PDT)
Re: [AMBER] Alanin scanning MMGBSA.py error: TypeError: not all arguments converted during string formatting
(Fri Apr 17 2015 - 01:38:21 PDT)
[AMBER] Alanin scanning MMGBSA.py error: TypeError: not all arguments converted during string formatting
(Thu Apr 16 2015 - 00:06:05 PDT)
[AMBER] MMBP(GB)SA free energy decomposition error: sander failed with prmtop
(Wed Apr 08 2015 - 20:40:05 PDT)
Michael Shokhen
Re: [AMBER] Error in tutorial A16, Amber 14
(Thu Apr 09 2015 - 03:14:54 PDT)
[AMBER] Error in tutorial A16, Amber 14
(Tue Apr 07 2015 - 23:16:48 PDT)
[AMBER] Error message in Amber14 tutorial A16
(Tue Apr 07 2015 - 12:57:12 PDT)
Michele Bonus
Re: [AMBER] charmmlipid2amber2.py error
(Sat Apr 25 2015 - 06:10:25 PDT)
Miguel Ángel Mompeán García
[AMBER] pdbamb gives wrong resnumber
(Tue Apr 28 2015 - 10:32:59 PDT)
MOHD HOMAIDUR RAHMAN
Re: [AMBER] Segmentation fault in AmberTool 14.25
(Mon Apr 27 2015 - 23:28:59 PDT)
[AMBER] Segmentation fault in AmberTool 14.25
(Sun Apr 26 2015 - 23:20:15 PDT)
[AMBER] segmentation fault in AmberTool 14.25
(Sat Apr 25 2015 - 07:56:44 PDT)
muhammad tahir ayub
[AMBER] how to run non standard simulation
(Mon Apr 27 2015 - 11:39:46 PDT)
[AMBER] Deletion of H atoms from pdb file used for MD simulations
(Tue Apr 14 2015 - 23:35:51 PDT)
Muthukumaran R
[AMBER] EGB and EEL Values in MM-GBSA -reg
(Tue Apr 28 2015 - 11:03:58 PDT)
Re: [AMBER] PCA analysis
(Mon Apr 20 2015 - 06:24:01 PDT)
[AMBER] PCA analysis
(Mon Apr 20 2015 - 04:44:46 PDT)
Nahid Khiabani
Re: [AMBER] a question for hydrocarbons simulation using amber FF
(Sun Apr 12 2015 - 06:22:16 PDT)
Re: [AMBER] a question for hydrocarbons simulation using amber FF
(Sun Apr 12 2015 - 04:50:51 PDT)
Re: [AMBER] a question for hydrocarbons simulation using amber FF
(Sun Apr 12 2015 - 03:53:54 PDT)
[AMBER] a question for hydrocarbons simulation using amber FF
(Sun Apr 12 2015 - 03:33:15 PDT)
[AMBER] a question for hydrocarbons simulation using amber FF
(Sat Apr 11 2015 - 00:09:14 PDT)
[AMBER] a question for hydrocarbons simulation using amber FF
(Thu Apr 09 2015 - 13:33:43 PDT)
neha chaudhary
Re: [AMBER] regarding .prmtop file generation
(Sun Apr 26 2015 - 21:46:10 PDT)
Re: [AMBER] regarding .prmtop file generation
(Sat Apr 25 2015 - 01:46:32 PDT)
[AMBER] regarding .prmtop file generation
(Mon Apr 20 2015 - 03:58:06 PDT)
Neha Gandhi
Re: [AMBER] MMPBSA issues with ff12SB
(Fri Apr 03 2015 - 19:43:50 PDT)
[AMBER] MMPBSA issues with ff12SB
(Fri Apr 03 2015 - 08:34:21 PDT)
Novosielski, Ryan
Re: [AMBER] amber14 errors
(Thu Apr 02 2015 - 12:10:29 PDT)
Pallavi Mohanty
Re: [AMBER] Batch leap error!
(Fri Apr 17 2015 - 08:45:57 PDT)
Re: [AMBER] Batch leap error!
(Fri Apr 17 2015 - 04:59:43 PDT)
[AMBER] Batch leap error!
(Fri Apr 17 2015 - 04:02:00 PDT)
Pawel Janowski
Re: [AMBER] Arrangement of molecules in 3D packed state
(Thu Apr 23 2015 - 07:57:12 PDT)
Pengfei Li
Re: [AMBER] parameterization Zn2+ with MCPB
(Mon Apr 27 2015 - 06:54:21 PDT)
Re: [AMBER] mcpb problem
(Thu Apr 23 2015 - 07:28:01 PDT)
Re: [AMBER] The force field used in MCPB
(Tue Apr 07 2015 - 09:42:45 PDT)
Re: [AMBER] The Stand Model in MCPB
(Tue Apr 07 2015 - 08:24:26 PDT)
Re: [AMBER] The force field used in MCPB
(Tue Apr 07 2015 - 08:14:20 PDT)
Re: [AMBER] MCPB subprogram problem
(Wed Apr 01 2015 - 12:43:11 PDT)
Peter Kekenes-Huskey
Re: [AMBER] New Force Field
(Wed Apr 01 2015 - 06:20:00 PDT)
Pierre Bertin
Re: [AMBER] Carbon nanotube simulation
(Fri Apr 17 2015 - 08:32:06 PDT)
[AMBER] Carbon nanotube simulation
(Thu Apr 16 2015 - 23:51:08 PDT)
[AMBER] Organic solvent from imported molecule (e.g. : nitric acid)
(Thu Apr 09 2015 - 18:51:52 PDT)
Re: [AMBER] xleap Menu bar problems
(Thu Apr 09 2015 - 09:16:08 PDT)
[AMBER] xleap Menu bar problems
(Wed Apr 08 2015 - 18:21:20 PDT)
pooja chahal
Re: [AMBER] Diffusion constant calculation
(Wed Apr 15 2015 - 20:42:21 PDT)
Re: [AMBER] Diffusion constant calculation
(Wed Apr 15 2015 - 05:25:58 PDT)
Re: [AMBER] Diffusion constant calculation
(Mon Apr 13 2015 - 21:42:24 PDT)
[AMBER] Diffusion constant calculation
(Thu Apr 09 2015 - 23:20:24 PDT)
psu4.uic.edu
Re: [AMBER] EGB and ESCF might not be converged if the net charge not equal to 0 in the QM/MM-GBSA
(Sun Apr 05 2015 - 17:35:39 PDT)
Re: [AMBER] EGB and ESCF might not be converged if the net charge not equal to 0 in the QM/MM-GBSA
(Fri Apr 03 2015 - 15:48:37 PDT)
Re: [AMBER] EGB and ESCF might not be converged if the net charge not equal to 0 in the QM/MM-GBSA
(Thu Apr 02 2015 - 00:27:31 PDT)
Quynh Vo
Re: [AMBER] error **** in output file with wrapping first molecule on GPU
(Thu Apr 02 2015 - 09:41:23 PDT)
[AMBER] error **** in output file with wrapping first molecule on GPU
(Wed Apr 01 2015 - 23:00:08 PDT)
Ray Luo, Ph.D.
Re: [AMBER] MMPBSA issues with ff12SB
(Fri Apr 03 2015 - 22:00:53 PDT)
Re: [AMBER] MMPBSA issues with ff12SB
(Fri Apr 03 2015 - 10:28:20 PDT)
Robert Molt
Re: [AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 09:13:15 PDT)
Re: [AMBER] Antechamber Algorithm for Atom Type
(Tue Apr 28 2015 - 17:42:08 PDT)
Re: [AMBER] Antechamber Algorithm for Atom Type
(Tue Apr 28 2015 - 06:51:08 PDT)
Re: [AMBER] Antechamber Algorithm for Atom Type
(Tue Apr 28 2015 - 06:03:24 PDT)
[AMBER] Antechamber Algorithm for Atom Type
(Mon Apr 27 2015 - 18:19:57 PDT)
Ross Walker
Re: [AMBER] Query about microsecond long simulation
(Thu Apr 30 2015 - 04:21:42 PDT)
Re: [AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 06:37:04 PDT)
Re: [AMBER] Any timeline for TI on GPU's?
(Wed Apr 22 2015 - 23:10:42 PDT)
Re: [AMBER] Amber GPU Segmentation fault
(Tue Apr 21 2015 - 16:06:21 PDT)
Re: [AMBER] How to resolve the problem when amber14 configured with cuda 6.5
(Sat Apr 18 2015 - 01:53:07 PDT)
[AMBER] Invitation to Computational Chemical Biology Conference (Aug 6th to 9th 2015), Cairns, Australia (http://tinyurl.com/nyblv7o)
(Fri Apr 10 2015 - 15:25:23 PDT)
Re: [AMBER] Unsupported CUDA version 7.0 detected.
(Fri Apr 10 2015 - 14:39:09 PDT)
Re: [AMBER] EGB and ESCF might not be converged if the net charge not equal to 0 in the QM/MM-GBSA
(Mon Apr 06 2015 - 09:21:03 PDT)
Re: [AMBER] AMBER14 pmemd.cuda.MPI : *** in mdout files
(Fri Apr 03 2015 - 22:18:58 PDT)
Re: [AMBER] EGB and ESCF might not be converged if the net charge not equal to 0 in the QM/MM-GBSA
(Fri Apr 03 2015 - 15:57:23 PDT)
Sajeewa Pemasinghe
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 07:55:29 PDT)
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 07:39:48 PDT)
Samaneh Mesbahi
[AMBER] restraining in xz coordinates only
(Thu Apr 30 2015 - 06:33:32 PDT)
[AMBER] restraining in xz coordinates only
(Wed Apr 29 2015 - 20:33:25 PDT)
Samuel Bowerman
Re: [AMBER] Possible bug in nativecontacts command of cpptraj (v14)?
(Tue Apr 07 2015 - 13:28:37 PDT)
[AMBER] Possible bug in nativecontacts command of cpptraj (v14)?
(Tue Apr 07 2015 - 10:52:57 PDT)
Sanja Zivanovic
[AMBER] ATTN needs revision
(Tue Apr 21 2015 - 08:13:35 PDT)
[AMBER] AHTECHAMBER - G09
(Wed Apr 08 2015 - 06:33:10 PDT)
sanjaykumar.imtech.res.in
Re: [AMBER] query
(Tue Apr 07 2015 - 03:31:16 PDT)
[AMBER] query
(Mon Apr 06 2015 - 01:46:29 PDT)
Sanjib Paul
Re: [AMBER] AMBER 14 installation problem
(Thu Apr 23 2015 - 06:27:33 PDT)
[AMBER] AMBER 14 installation problem
(Wed Apr 22 2015 - 22:49:14 PDT)
shahab shariati
[AMBER] mpirun error
(Sun Apr 26 2015 - 09:23:40 PDT)
Shreeramesh
Re: [AMBER] Error while running MMPBSA
(Fri Apr 03 2015 - 02:24:10 PDT)
Re: [AMBER] Error while running MMPBSA
(Thu Apr 02 2015 - 08:15:21 PDT)
Re: [AMBER] Error while running MMPBSA
(Thu Apr 02 2015 - 07:47:42 PDT)
[AMBER] Error while running MMPBSA
(Thu Apr 02 2015 - 00:00:59 PDT)
Shubhadip Das
[AMBER] Problem regarding PMF curve
(Sun Apr 19 2015 - 08:49:15 PDT)
Shukla, Saurabh
[AMBER] One chain of protein going out of box
(Sun Apr 19 2015 - 18:27:55 PDT)
Sofia Vasilakaki
Re: [AMBER] Deletion of H atoms from pdb file used for MD simulations
(Wed Apr 15 2015 - 05:46:22 PDT)
Re: [AMBER] Problem with MMPBSA.py.MPI for nmode
(Fri Apr 10 2015 - 15:23:03 PDT)
Re: [AMBER] Problem with MMPBSA.py.MPI for nmode
(Thu Apr 09 2015 - 09:07:56 PDT)
[AMBER] Problem with MMPBSA.py.MPI for nmode
(Thu Apr 09 2015 - 07:39:15 PDT)
Soumendranath Bhakat
Re: [AMBER] Regarding running to independent simulations
(Sun Apr 26 2015 - 07:51:23 PDT)
[AMBER] Regarding running to independent simulations
(Sat Apr 25 2015 - 03:10:36 PDT)
Sourav Purohit
Re: [AMBER] defining residues in steered molecular dynamics
(Wed Apr 08 2015 - 09:08:25 PDT)
sribone.fcq.unc.edu.ar
Re: [AMBER] New Force Field
(Wed Apr 01 2015 - 07:47:38 PDT)
Steven Ramsey
[AMBER] Energy drift issue
(Tue Apr 07 2015 - 12:52:55 PDT)
[AMBER] potential issue with energy drift
(Tue Apr 07 2015 - 06:30:25 PDT)
sudipta
[AMBER] problem with CHAMBER
(Sat Apr 25 2015 - 11:21:19 PDT)
suma jayakrishnan
Re: [AMBER] Deletion of H atoms from pdb file used for MD simulations
(Wed Apr 15 2015 - 03:21:20 PDT)
Swithin Hanosh
[AMBER] STRUCTURAL CHANGE AFTER HEATING
(Thu Apr 30 2015 - 05:06:44 PDT)
[AMBER] REGARDING ENERGY MINIMISATION
(Wed Apr 15 2015 - 05:32:32 PDT)
[AMBER] REGARDING ENERGY MINIMISATION
(Tue Apr 14 2015 - 04:42:26 PDT)
[AMBER] REGARDING ATOM TYPE ERROR
(Mon Apr 06 2015 - 22:17:24 PDT)
Thomas C. Bishop
Re: [AMBER] Query about microsecond long simulation
(Wed Apr 29 2015 - 13:03:17 PDT)
Thomas Cheatham
Re: [AMBER] DNA partial charges in Amber library
(Thu Apr 23 2015 - 22:54:28 PDT)
Thomas Exner
[AMBER] Bursary deadline, May 15, 2015: Drug Discovery Workshops Canada
(Thu Apr 30 2015 - 13:01:24 PDT)
[AMBER] Bursary deadline, May 15, 2015: Drug Discovery Workshops Milan
(Thu Apr 30 2015 - 12:59:52 PDT)
Ucisik, Melek Nihan
[AMBER] Any timeline for TI on GPU's?
(Wed Apr 22 2015 - 09:39:56 PDT)
Vaibhav Dixit
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Thu Apr 23 2015 - 12:29:14 PDT)
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 10:04:35 PDT)
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 09:16:19 PDT)
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 07:45:02 PDT)
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 07:05:28 PDT)
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 07:04:32 PDT)
Re: [AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 06:12:13 PDT)
[AMBER] sander error "peek_ewald_inpcrd: SHOULD NOT BE HERE"
(Tue Apr 21 2015 - 02:29:07 PDT)
Re: [AMBER] error in minimization
(Mon Apr 13 2015 - 03:18:02 PDT)
Re: [AMBER] larger bonds between protein atoms
(Thu Apr 09 2015 - 07:19:25 PDT)
[AMBER] larger bonds between protein atoms
(Thu Apr 09 2015 - 04:15:09 PDT)
Re: [AMBER] error generating P450 prmtop incrd file
(Thu Apr 09 2015 - 02:22:29 PDT)
Re: [AMBER] error generating P450 prmtop incrd file
(Wed Apr 08 2015 - 08:33:48 PDT)
Re: [AMBER] error generating P450 prmtop incrd file
(Tue Apr 07 2015 - 05:54:02 PDT)
[AMBER] error generating P450 prmtop incrd file
(Tue Apr 07 2015 - 04:54:14 PDT)
Vijay Achari
Re: [AMBER] Evaluating hydrogen boding lifetime
(Fri Apr 17 2015 - 20:40:52 PDT)
Re: [AMBER] Evaluating hydrogen boding lifetime
(Thu Apr 16 2015 - 22:47:05 PDT)
Re: [AMBER] Evaluating hydrogen boding lifetime
(Wed Apr 15 2015 - 23:41:54 PDT)
[AMBER] typo error in the amber14 manual
(Tue Apr 07 2015 - 00:41:04 PDT)
[AMBER] Radial distribution function (RDF) for sugars in disaccharides
(Mon Apr 06 2015 - 19:51:19 PDT)
vijay kumar narsapuram
Re: [AMBER] Error: Unable to run flex; this is required for NAB and antechamber Please check your PATH, or install the program
(Fri Apr 24 2015 - 07:52:10 PDT)
Re: [AMBER] Error: Unable to run flex; this is required for NAB and antechamber Please check your PATH, or install the program
(Thu Apr 23 2015 - 12:56:43 PDT)
Re: [AMBER] Error: Unable to run flex; this is required for NAB and antechamber Please check your PATH, or install the program
(Thu Apr 23 2015 - 09:50:14 PDT)
Re: [AMBER] Error: Unable to run flex; this is required for NAB and antechamber Please check your PATH, or install the program
(Thu Apr 23 2015 - 04:48:19 PDT)
Re: [AMBER] Error: Unable to run flex; this is required for NAB and antechamber Please check your PATH, or install the program
(Thu Apr 23 2015 - 04:02:01 PDT)
Re: [AMBER] Error: Unable to run flex; this is required for NAB and antechamber Please check your PATH, or install the program
(Thu Apr 23 2015 - 03:15:09 PDT)
vitonoja.yahoo.com
[AMBER] CENTOS 6.6 :ERROR - INSTALLATION OF AMBERTOOLS14/AMBER14
(Wed Apr 22 2015 - 20:06:11 PDT)
Vivek Shankar Bharadwaj
[AMBER] Calculating Cp values from NPT simulations using ptraj
(Tue Apr 14 2015 - 14:42:13 PDT)
Vlad Cojocaru
Re: [AMBER] Community network analysis for the Amber trajectories
(Tue Apr 14 2015 - 12:19:13 PDT)
Re: [AMBER] Community network analysis for the Amber trajectories
(Tue Apr 14 2015 - 12:11:56 PDT)
vladimir.palivec.marge.uochb.cas.cz
Re: [AMBER] Free energy calculation of ligand binding energy: Thermodynamic integration - pmemd - single topology - vdw
(Sat Apr 25 2015 - 04:58:53 PDT)
[AMBER] Free energy calculation of ligand binding energy: Thermodynamic integration - pmemd - single topology - vdw
(Thu Apr 23 2015 - 08:26:11 PDT)
[AMBER] Free energy calculation of ligand binding energy: Thermodynamic integration - long range dispersion correction - recalculate trajectory with different potential
(Thu Apr 02 2015 - 03:57:35 PDT)
Wang Moye
[AMBER] The question about how to restart REMD simulation in AMBER12 and Langavin dynamics
(Wed Apr 29 2015 - 00:46:23 PDT)
windy
Re: [AMBER] In MMPBSY.py , how to set interval value when large conformation change ?
(Wed Apr 22 2015 - 21:05:50 PDT)
Re: [AMBER] In MMPBSY.py , how to set interval value when large conformation change ?
(Tue Apr 21 2015 - 18:58:22 PDT)
[AMBER] In MMPBSY.py , how to set interval value when large conformation change ?
(Mon Apr 20 2015 - 01:41:27 PDT)
Re: [AMBER] The influence of parameters in md.in when restart a MD (from rst file)
(Fri Apr 17 2015 - 02:51:53 PDT)
[AMBER] The influence of parameters in md.in when restart a MD (from rst file)
(Wed Apr 15 2015 - 07:05:31 PDT)
Re: [AMBER] How to use the mmpbsa.py to calcualte the free energy of a modified protein ?
(Fri Apr 10 2015 - 21:35:39 PDT)
[AMBER] How to use the mmpbsa.py to calcualte the free energy of a modified protein ?
(Thu Apr 09 2015 - 19:29:59 PDT)
wjli
[AMBER] MMPBSA.py error:length mismatch in energy vectors
(Tue Apr 14 2015 - 01:38:26 PDT)
[AMBER] re： Bad atom Type in MMPBSA.py
(Mon Apr 13 2015 - 05:42:10 PDT)
Re: [AMBER] Bad atom Type in MMPBSA.py
(Sun Apr 12 2015 - 00:19:24 PDT)
[AMBER] 回复：Re: Bad atom Type in MMPBSA.py
(Sat Apr 11 2015 - 23:09:04 PDT)
[AMBER] Bad atom Type in MMPBSA.py
(Fri Apr 10 2015 - 19:35:15 PDT)
[AMBER] The Stand Model in MCPB
(Tue Apr 07 2015 - 02:00:29 PDT)
[AMBER] The force field used in MCPB
(Mon Apr 06 2015 - 23:28:41 PDT)
[AMBER] The Meaning of Some Parameters
(Sun Apr 05 2015 - 05:14:27 PDT)
wliu
Re: [AMBER] The error occurs when I set radiopt =1 in MMPBSA.py
(Thu Apr 23 2015 - 05:38:28 PDT)
[AMBER] The error occurs when I set radiopt =1 in MMPBSA.py
(Tue Apr 21 2015 - 08:28:07 PDT)
Wong, Sook (NIH/NCATS) [V]
Re: [AMBER] FW: TLEAP Fatal Error
(Tue Apr 07 2015 - 09:23:51 PDT)
[AMBER] FW: TLEAP Fatal Error
(Tue Apr 07 2015 - 08:15:15 PDT)
Re: [AMBER] Lipid Conversion from Charmm PDB to Lipid14 PDB
(Thu Apr 02 2015 - 12:59:40 PDT)
Re: [AMBER] Lipid Conversion from Charmm PDB to Lipid14 PDB
(Thu Apr 02 2015 - 12:51:33 PDT)
[AMBER] Lipid Conversion from Charmm PDB to Lipid14 PDB
(Thu Apr 02 2015 - 12:35:27 PDT)
Yip Yew Mun
[AMBER] Is there NHE cap in the ff02 library files?
(Mon Apr 27 2015 - 21:06:06 PDT)
Re: [AMBER] Multiple MEPs option in R.E.D tools
(Tue Mar 31 2015 - 20:08:17 PDT)
Ziheng Wang
Re: [AMBER] Question Regarding reduce function of Antechamber
(Sun Apr 05 2015 - 12:07:47 PDT)
[AMBER] Question Regarding reduce function of Antechamber
(Sat Apr 04 2015 - 12:34:22 PDT)
肖立
[AMBER] Problem in running with steered MD
(Sun Apr 19 2015 - 18:29:42 PDT)
Re: [AMBER] Could anyone tell me how to run targeted MD correctly
(Fri Apr 17 2015 - 11:04:29 PDT)
Re: [AMBER] Could anyone tell me how to run targeted MD correctly
(Fri Apr 17 2015 - 11:03:23 PDT)
Re: [AMBER] Could anyone tell me how to run targeted MD correctly
(Fri Apr 17 2015 - 10:10:10 PDT)
[AMBER] Could anyone tell me how to run targeted MD correctly
(Thu Apr 16 2015 - 23:45:08 PDT)
金毅
Re: [AMBER] How to resolve the problem when amber14 configured with cuda 6.5
(Sat Apr 18 2015 - 06:35:29 PDT)
Re: [AMBER] How to resolve the problem when amber14 configured with cuda 6.5
(Sat Apr 18 2015 - 04:50:02 PDT)
[AMBER] How to resolve the problem when amber14 configured with cuda 6.5
(Fri Apr 17 2015 - 23:28:41 PDT)
Last message date
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Thu Apr 30 2015 - 16:00:02 PDT
Archived on
: Fri Dec 20 2024 - 05:55:12 PST
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