On Thu, Apr 30, 2015 at 2:05 PM, Jonathan Gough <jonathan.d.gough.gmail.com>
wrote:
> It is off topic. I "think" it was in reference to running a single 1
> microsecond trajectory vs. breaking it up into 10x100ns trajectories (each
> started with a new random seed but using the coordinates from the end of
> the previous trajectory). Sequential serial calculations.
>
​But there's nothing different about that compared to a single long
simulation -- how you break up the long simulation into chunks is a matter
of personal preference with no scientific implications that I'm aware of
(only practical implications involving efficient resource use, scheduling
requirements, and fault tolerance).
All the best,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Thu Apr 30 2015 - 11:30:04 PDT
