[AMBER] defining residues in steered molecular dynamics

From: Ayesha Fatima <ayeshafatima.69.gmail.com>
Date: Wed, 8 Apr 2015 22:57:53 +0800

Dear All,
I want to carry out SMD on a protein-protein complex. When I read the
input file in the manual as well as on the mailing list, i find that
there are ways to define atoms using "iat" and the "igr" commands.
However, does anyone have experience in defining whole residues ?
thanks
regards
ayesha, UM

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Apr 08 2015 - 08:00:11 PDT
Custom Search