Dear all,
I am going to install AMBER14 following the page
*swails.wikidot.com/installing-amber14-and-ambertools14
<
http://swails.wikidot.com/installing-amber14-and-ambertools14>.*
When I am trying to configure by the command *./configure gnu, *my machine
could not connect to
http://ambermd.org for available patches. But, no
other error message has come. And 'the configuration file, config.h, was
successfully created'. But to get available patches I set the environment
variable http_proxy.
*export http_proxy="
http://username:password.proxyserver:port"*
And then I tried to reconfigure by the same command, *./configure gnu. *This
time
configuration stopped after showing few messages. I could understand most
of them. So I am copying those messages here.
*Checking for updates...*
*Checking for available patches online. This may take a few seconds...*
*Available AmberTools 14 patches:*
*update.1.bz2, update.2, update.3, update.4, update.5, update.6, update.7,
update.8, update.9, update.10,*
*update.11, update.12, update.13, update.14.bz2, update.15, update.16,
update.17, update.18, update.19, update.20,*
*update.21, update.22, update.23, update.24, update.25, update.26 *
*Available Amber 14 patches:*
*update.1, update.2, update.3, update.4, update.5, update.6, update.7,
update.8, update.9, update.10,*
*update.11 *
*There are patches available. Do you want to apply them now? [y/N]
(Recommended Y) *
*Y*
*Preparing to apply updates... please wait.*
*Traceback (most recent call last):*
* File "./update_amber", line 23, in <module>*
* app.mainloop()*
* File "/home/software/AMBER14/amber14/updateutils/main.py", line 489, in
mainloop*
* self.update()*
* File "/home/software/AMBER14/amber14/updateutils/main.py", line 43, in
newfcn*
*fcn(self, *args, **kwargs)*
* File "/home/software/AMBER14/amber14/updateutils/main.py", line 317, in
update*
* self._update_ambertools()*
* File "/home/software/AMBER14/amber14/updateutils/main.py", line 43, in
newfcn*
* fcn(self, *args, **kwargs)*
* File "/home/software/AMBER14/amber14/updateutils/main.py", line 212, in
_update_ambertools*
* last)*
* File "/home/software/AMBER14/amber14/updateutils/main.py", line 43, in
newfcn*
* fcn(self, *args, **kwargs)*
* File "/home/software/AMBER14/amber14/updateutils/main.py", line 187, in
_update_tree*
*last = remote.last()*
* File "/home/software/AMBER14/amber14/updateutils/repos.py", line 289, in
last*
* self.fill_list()*
* File "/home/software/AMBER14/amber14/updateutils/downloader.py", line
104, in new_fcn*
* return fcn(*args, **kwargs)*
* File "/home/software/AMBER14/amber14/updateutils/repos.py", line 204, in
fill_list*
* p = urlopen(url)*
* File "/usr/lib64/python2.6/urllib2.py", line 126, in urlopen*
* return _opener.open(url, data, timeout)*
* File "/usr/lib64/python2.6/urllib2.py", line 391, in open*
* response = self._open(req, data)*
* File "/usr/lib64/python2.6/urllib2.py", line 409, in _open*
* '_open', req)*
* File "/usr/lib64/python2.6/urllib2.py", line 369, in _call_chain*
* result = func(*args)*
*File "/usr/lib64/python2.6/urllib2.py", line 1190, in http_open*
* return self.do_open(httplib.HTTPConnection, req)*
* File "/usr/lib64/python2.6/urllib2.py", line 1165, in do_open*
* raise URLError(err)*
*urllib2.URLError: <urlopen error [Errno 104] Connection reset by peer>*
*Automatic patching failed! Check the errors before re-configuring*
Here I have been instructed that I should check the errors before
re-configuring. But I can not understand at all where and what the errors
are. So if someone
kindly helps to overcome this problem I will be very grateful.
Thanking you.
Sanjib Paul
Indian Institute of Technology, Kharagpur.
Kharagpur 721302
India
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Received on Wed Apr 22 2015 - 23:00:02 PDT
