[AMBER] Community network analysis for the Amber trajectories

From: James Starlight <jmsstarlight.gmail.com>
Date: Tue, 14 Apr 2015 16:25:27 +0200

Dear Amber users!

I wonder to ask whether someone used VMDs NetworkView plugin for the
analysis of the biosimulations carried out in Amber? From the tutorial
I've found that to calculate covariance matrix prior to Networks
calculations some external programs like CARMA are used which directly
works with the NAMD-like psf topologies. Are there any other
possibilities to do the same using amber-like inputs?


Thanks!

James

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Received on Tue Apr 14 2015 - 07:30:05 PDT
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