Dear all,
I have been following tutorial B4, the protein-ligand system with sustiva. I tried to reduce the sustiva pdb file by using reduce sustiva > sustiva_h.pdb. However, the terminal log and the produced sustiva_h.pdb show that no hydrogens are added, as a result, the new sustiva_h.pdb has an odd number of electrons and cannot be processed by sqm. I wonder what caused the problem with the reduce method and how to fix it.
Thank you,
Tony
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Received on Sat Apr 04 2015 - 13:00:02 PDT
