Re: [AMBER] How to resolve the problem when amber14 configured with cuda 6.5

From: Jason Swails <jason.swails.gmail.com>
Date: Sun, 19 Apr 2015 15:29:51 -0400

Are you behind a firewall? Do you have to connect to the Internet through a proxy?

The manual has instructions for dealing with these kinds of situations.

--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
> On Apr 18, 2015, at 9:35 AM, 金毅 <jinyi.ynu.edu.cn> wrote:
> 
> Hello Ross
> 
> thank you for your method, the configure for CUDA is now successfully.
> I found the "update_amber" command  can not really link to the amber web-site and download update.X automatically. so  I downloaded all update.X files, and use "update_amber --apply-patch=/" to fix bugs.
> When using $AMBERHOME/update_amber --update, it reported error as :
> -------------------------------------------------------------------------
> urllib2.URLError: <urlopen error timed out>
> Check for updates failed.
> ------------------------------------------------------------------------
> what is wrong?  is it a bug? thanks.
> 
> Jin yi
> 
> _
> ---------- Origin message ----------
>> From："Ross Walker" <ross.rosswalker.co.uk>
>> To："AMBER Mailing List" <amber.ambermd.org>
>> Subject：Re: [AMBER] How to resolve the problem when amber14 configured with cuda 6.5
>> Date：2015-04-18 16:53:07
> 
> Hi Jinyi,
> 
> This looks like a corrupt copy of AMBER 14 - it should have downloaded update 6 which adds support for CUDA 6.5 but it is reporting no patches available. the simplest solution is probably to delete your AMBER 14 source tree and then create it again by untarring the original AmberTools 14 and Amber 14 tar files.
> 
> Then when you run configure it should prompt you to apply updates. Say yes and then it should support CUDA 6.5.
> 
> All the best
> Ross
> 
> 
>> On Apr 17, 2015, at 11:28 PM, 金毅 <jinyi.ynu.edu.cn> wrote:
>> 
>> Dear sir:
>> 
>> Our GPU is GTX970, and CUDA Tools is 6.5 ver, but when I configure cuda to install, there is an erro reported as below:
>> 
>> ----------------------------------------------------------------------------------------------------------------
>> [jinyi.JinYi amber14]$ ./configure -cuda intel
>> Checking for updates...
>> Checking for available patches online. This may take a few seconds...
>> 
>> Available AmberTools 14 patches:
>> 
>> No patches available
>> 
>> Available Amber 14 patches:
>> 
>> No patches available
>> Searching for python2... Found python2.7: /home/jinyi/program/Python-2.7.2/bin/bin/python2.7
>> Error: Unsupported CUDA version 6.5 detected.
>> AMBER requires CUDA version == 5.0 .or. 5.5 .or. 6.0
>> --------------------------------------------------------------------------------------------------------------------------------
>> 
>> 
>> but the new of amber14 in amber14 web-site said : " Support for CUDA 5.0, 5.5, 6.0 and 6.5", Could you help me to resolve this problem? thank you.
>> 
>> 
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Received on Sun Apr 19 2015 - 13:00:02 PDT