[AMBER] hydrogen bond analysis using cpptraj in amber tools 14

From: Atila Petrosian <atila.petrosian.gmail.com>
Date: Tue, 14 Apr 2015 12:55:27 +0430

Dear amber users

I want to do hydrogen bond analysis on my system ( protein (with 93
residues)-ligand) using cpptraj.

My input file is as follows:

parm complex.prmtop
trajin prod.mdcrd
hbond :1-93 series out nhb.dat avgout avghb.dat

Is this file true?

Any help will highly appreciated.
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Received on Tue Apr 14 2015 - 01:30:03 PDT
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