Re: [AMBER] Arrangement of molecules in 3D packed state

From: Pawel Janowski <pawelrc.gmail.com>
Date: Thu, 23 Apr 2015 10:57:12 -0400

Also, if you get stuck we have a script that will produce the REMARK 290
given any space group. If you require it, let me know.

Pawel

On Thu, Apr 23, 2015 at 10:31 AM, David A Case <case.biomaps.rutgers.edu>
wrote:

> On Thu, Apr 23, 2015, jacob wick wrote:
> > >
> >
> > I have a cif file of a small molecule of my interest. So, is it worth to
> > use UNITCELL command on cif file or only pdb file format is required?
>
> The UnitCell comand requires PDB-format input. But there are lots of tools
> to convert cif to pdb, just Google on "convert cit to pdb".
>
> (It might be a bit complicated, since the UnitCell commands uses
> information
> in the REMARK 290 block, and not all programs might provide this. If this
> is
> a problem, you can use VMD, Chimera, Mercury, or many other programs to
> contruct the unit cell, or supercells that consist of many unit cells.
> Save
> in PDB format, and use that as the input to loadPdb in LEaP.)
>
> ....dac
>
>
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Received on Thu Apr 23 2015 - 08:00:03 PDT
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