[AMBER] Lipid Conversion from Charmm PDB to Lipid14 PDB

From: Wong, Sook (NIH/NCATS) [V] <"Wong,>
Date: Thu, 2 Apr 2015 19:35:27 +0000

Hi,

I am facing an issue on converting the DPPC membrane PDB from charmm to lipid14 using charmmlipid2amber. Ended up with the following:

[****]$ charmmlipid2amber.py -i step5_assembly.pdb \ -c path/AmberTools/src/etc/charmmlipid2amber/charmmlipid2amber.csv \ -o step5.pdb
Usage: charmmlipid2amber.py [-c charmmlipid2amber.csv] -i input.pdb -o output.pdb

There is no output pdb generated from the command and I am not sure why. Appreciate if anyone can help.

-Sook
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Apr 02 2015 - 13:00:04 PDT