Amber Archive Sep 2020 by author
398 messages
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Starting
Tue Sep 01 2020 - 00:00:02 PDT,
Ending
Wed Sep 30 2020 - 22:30:02 PDT
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Aashish Bhatt
[AMBER] Fwd: azobenzene atoms name in amber format
(Fri Sep 11 2020 - 07:58:40 PDT)
Re: [AMBER] azobenzene atoms name in amber format
(Thu Sep 10 2020 - 04:14:30 PDT)
Adrian Roitberg
Re: [AMBER] expected average fluctuations in amino acid covalent bond distances, angle and torsion during typical md simulations
(Thu Sep 17 2020 - 10:20:47 PDT)
aishen
Re: [AMBER] xleap
(Tue Sep 29 2020 - 23:01:17 PDT)
Re: [AMBER] xleap
(Tue Sep 29 2020 - 05:34:35 PDT)
Re: [AMBER] xleap
(Tue Sep 29 2020 - 05:28:12 PDT)
Re: [AMBER] xleap
(Tue Sep 29 2020 - 03:05:53 PDT)
Re: [AMBER] xleap
(Thu Sep 24 2020 - 01:06:56 PDT)
Re: [AMBER] xleap
(Thu Sep 24 2020 - 00:52:29 PDT)
[AMBER] xleap
(Wed Sep 23 2020 - 13:19:02 PDT)
[AMBER] french version
(Wed Sep 23 2020 - 00:59:00 PDT)
Re: [AMBER] Regarding help in installation (LINUX ubuntu)
(Fri Sep 11 2020 - 02:04:03 PDT)
Re: [AMBER] Just for info
(Mon Sep 07 2020 - 08:55:31 PDT)
[AMBER] Just for info
(Mon Sep 07 2020 - 03:03:09 PDT)
Re: [AMBER] executable names from nab
(Thu Sep 03 2020 - 10:16:39 PDT)
Re: [AMBER] [MicrosoftExchange329e71ec88ae4615bbc36ab6ce41109e@rutgegetting a nucleic acid helix structure
(Wed Sep 02 2020 - 07:55:22 PDT)
Akshay Prabhakant
Re: [AMBER] best way to umbrella-sample a pseudo-dihedral angle Collective Variable
(Thu Sep 03 2020 - 10:49:13 PDT)
[AMBER] best way to umbrella-sample a pseudo-dihedral angle Collective Variable
(Wed Sep 02 2020 - 04:18:17 PDT)
Alexander Izvorski
Re: [AMBER] Cyclic peptides in Amber?
(Sun Sep 06 2020 - 15:14:29 PDT)
Re: [AMBER] Cyclic peptides in Amber?
(Sat Sep 05 2020 - 01:05:14 PDT)
[AMBER] Cyclic peptides in Amber?
(Fri Sep 04 2020 - 22:52:52 PDT)
ali akbar
[AMBER] RMSD do not increase with the increase of temperature
(Sat Sep 05 2020 - 01:00:37 PDT)
Alysia Mandato
Re: [AMBER] Generate deleted .rst file from coordinates?
(Thu Sep 17 2020 - 07:36:34 PDT)
[AMBER] Generate deleted .rst file from coordinates?
(Wed Sep 16 2020 - 06:54:41 PDT)
An Ta
Re: [AMBER] Stripping Protocol in Cpptraj
(Fri Sep 04 2020 - 12:40:12 PDT)
Aravind R
[AMBER] REMD Trajectory Processing
(Tue Sep 29 2020 - 00:25:32 PDT)
Asmi Mahmood
[AMBER] MMPBSA.py error for mismatch NATOMS
(Wed Sep 23 2020 - 23:28:10 PDT)
[AMBER] MMPBSA.py error
(Mon Sep 21 2020 - 03:37:35 PDT)
Athena N
Re: [AMBER] Make some of RNA bases as DNA in leap
(Mon Sep 28 2020 - 09:57:57 PDT)
[AMBER] Make some of RNA bases as DNA in leap
(Mon Sep 28 2020 - 09:23:10 PDT)
[AMBER] Adding ions at a particular position
(Tue Sep 08 2020 - 21:14:17 PDT)
Bill Ross
Re: [AMBER] xleap
(Tue Sep 29 2020 - 03:05:37 PDT)
Re: [AMBER] xleap
(Tue Sep 29 2020 - 01:34:57 PDT)
Re: [AMBER] How does tleap detect improper torsions?
(Thu Sep 24 2020 - 22:34:55 PDT)
Re: [AMBER] How does tleap detect improper torsions?
(Thu Sep 24 2020 - 10:19:51 PDT)
Re: [AMBER] Coordinate resetting cannot be accomplished -reg
(Wed Sep 23 2020 - 03:54:56 PDT)
Re: [AMBER] Stuck at the heating stage
(Sat Sep 19 2020 - 05:01:27 PDT)
Re: [AMBER] Stuck at the heating stage
(Sat Sep 19 2020 - 03:01:29 PDT)
Re: [AMBER] Formation of a cyclic peptide
(Sat Sep 19 2020 - 02:09:00 PDT)
Re: [AMBER] Tleap creates only one residue
(Wed Sep 16 2020 - 20:10:42 PDT)
[AMBER] Of possible interest: Chem Faiss
(Tue Sep 15 2020 - 04:33:28 PDT)
Re: [AMBER] Just for info
(Mon Sep 07 2020 - 03:17:18 PDT)
Re: [AMBER] Cyclic peptides in Amber?
(Sat Sep 05 2020 - 01:10:55 PDT)
Re: [AMBER] Cyclic peptides in Amber?
(Sat Sep 05 2020 - 01:06:59 PDT)
Re: [AMBER] RMSD do not increase with the increase of temperature
(Sat Sep 05 2020 - 01:05:12 PDT)
Re: [AMBER] Cyclic peptides in Amber?
(Sat Sep 05 2020 - 00:59:26 PDT)
Re: [AMBER] | ERROR: I could not find enough velocities in 1346.rst7
(Thu Sep 03 2020 - 22:49:55 PDT)
Re: [AMBER] | ERROR: I could not find enough velocities in 1346.rst7
(Thu Sep 03 2020 - 19:19:21 PDT)
Re: [AMBER] best way to umbrella-sample a pseudo-dihedral angle Collective Variable
(Wed Sep 02 2020 - 04:57:22 PDT)
Re: [AMBER] Enquiry
(Tue Sep 01 2020 - 02:40:28 PDT)
Billiot, Eugene
[AMBER] Advice on calculating binding energies of enantiomers
(Wed Sep 16 2020 - 07:05:50 PDT)
Brian Radak
Re: [AMBER] How does tleap detect improper torsions?
(Thu Sep 24 2020 - 08:56:15 PDT)
Re: [AMBER] How does tleap detect improper torsions?
(Wed Sep 23 2020 - 05:57:52 PDT)
[AMBER] How does tleap detect improper torsions?
(Tue Sep 22 2020 - 13:57:46 PDT)
Camila Clemente
[AMBER] How to recopile with new version of CUDA
(Mon Sep 21 2020 - 14:24:39 PDT)
Carlos Simmerling
Re: [AMBER] REMD Trajectory Processing
(Tue Sep 29 2020 - 06:18:19 PDT)
Re: [AMBER] Strange RMSD tower appearing in simulation
(Tue Sep 08 2020 - 08:58:47 PDT)
Casalini Tommaso
Re: [AMBER] MCPB with OPC water?
(Tue Sep 08 2020 - 06:34:43 PDT)
Charo del Genio
Re: [AMBER] Fw: prepare_ligand4.py converts CA carbons to calcium atoms when doing the mol2 to pdbqt format conversion
(Fri Sep 04 2020 - 01:17:31 PDT)
Re: [AMBER] Questions (and a small bug report) about SIRAH in Amber
(Tue Sep 01 2020 - 08:06:44 PDT)
CHENTOUF Sara
[AMBER] pymsmt.exp.pymsmtError: MOL is required in naa_mol2files but not provided.
(Mon Sep 14 2020 - 07:25:09 PDT)
Chetna Tyagi
Re: [AMBER] adding lysyl-phosphatidylglycerol and cardiolipin
(Thu Sep 24 2020 - 04:30:37 PDT)
[AMBER] adding lysyl-phosphatidylglycerol and cardiolipin
(Wed Sep 16 2020 - 05:11:05 PDT)
Claire Claire
[AMBER] MCPB parametrization for an RNA systems
(Wed Sep 02 2020 - 02:43:38 PDT)
Clorice Reinhardt
Re: [AMBER] Combining repeated MD trajectories
(Tue Sep 08 2020 - 02:26:18 PDT)
cprivat.ub.edu
Re: [AMBER] [CPHMD] invalid reference to variable in NAMELIST input, CPIN file
(Mon Sep 21 2020 - 23:47:51 PDT)
[AMBER] [CPHMD] invalid reference to variable in NAMELIST input, CPIN file
(Mon Sep 21 2020 - 07:36:48 PDT)
Cruzeiro,Vinicius Wilian D
Re: [AMBER] [CPHMD] invalid reference to variable in NAMELIST input, CPIN file
(Mon Sep 21 2020 - 08:34:32 PDT)
Re: [AMBER] constant pH error
(Fri Sep 18 2020 - 15:43:03 PDT)
Re: [AMBER] constant pH MD in explicit solvent
(Fri Sep 18 2020 - 15:24:03 PDT)
Re: [AMBER] constant pH error
(Thu Sep 17 2020 - 08:05:19 PDT)
Re: [AMBER] constant pH MD in explicit solvent
(Mon Sep 14 2020 - 08:48:45 PDT)
Re: [AMBER] constant pH MD in explicit solvent
(Sat Sep 05 2020 - 10:22:53 PDT)
Re: [AMBER] cPHMD: how to define residues with two pkas
(Wed Sep 02 2020 - 20:28:41 PDT)
Daniel Roe
Re: [AMBER] AmberMdPrep github cpptraj not sourced
(Wed Sep 30 2020 - 06:34:19 PDT)
Re: [AMBER] REMD Trajectory Processing
(Tue Sep 29 2020 - 04:42:44 PDT)
Re: [AMBER] finding number of atoms within a radius
(Fri Sep 25 2020 - 10:58:39 PDT)
Re: [AMBER] water strip -reg
(Thu Sep 24 2020 - 05:51:03 PDT)
Re: [AMBER] tutorials restructured and ConstpH/redox tutorial pages not accessible
(Wed Sep 23 2020 - 06:26:59 PDT)
Re: [AMBER] Regarding help in installation (LINUX ubuntu)
(Wed Sep 23 2020 - 03:53:43 PDT)
Re: [AMBER] Coordinate resetting cannot be accomplished -reg
(Wed Sep 23 2020 - 03:51:15 PDT)
Re: [AMBER] Stuck at the heating stage
(Wed Sep 23 2020 - 03:47:47 PDT)
Re: [AMBER] autoimage for grid analysis with cpptraj
(Wed Sep 23 2020 - 03:24:16 PDT)
Re: [AMBER] autoimage for grid analysis with cpptraj
(Tue Sep 22 2020 - 06:38:08 PDT)
Re: [AMBER] Generate deleted .rst file from coordinates?
(Wed Sep 16 2020 - 08:05:32 PDT)
Re: [AMBER] problem with cpptraj
(Thu Sep 10 2020 - 09:10:34 PDT)
Re: [AMBER] problem with cpptraj
(Thu Sep 10 2020 - 06:13:48 PDT)
Re: [AMBER] Stripping Protocol in Cpptraj
(Fri Sep 04 2020 - 16:33:25 PDT)
Re: [AMBER] Unable to complete heating stage
(Fri Sep 04 2020 - 11:08:24 PDT)
Re: [AMBER] Change covar matrix precision when crdaction is used
(Fri Sep 04 2020 - 11:07:00 PDT)
Re: [AMBER] Confusion regarding Center of mass coordinates for protein, with CPPTRAJ
(Fri Sep 04 2020 - 11:00:41 PDT)
Re: [AMBER] Stripping Protocol in Cpptraj
(Fri Sep 04 2020 - 10:55:31 PDT)
Re: [AMBER] How to use the ntb options in amber-cuda-version
(Fri Sep 04 2020 - 10:49:14 PDT)
Re: [AMBER] How to select groups for energy calculations-CPPtraj
(Fri Sep 04 2020 - 10:45:54 PDT)
Re: [AMBER] "After the fact" lifetime analysis with CPPTRAJ
(Fri Sep 04 2020 - 10:41:59 PDT)
Re: [AMBER] Cpptraj pucker amplitude units?
(Fri Sep 04 2020 - 10:26:23 PDT)
Re: [AMBER] | ERROR: I could not find enough velocities in 1346.rst7
(Fri Sep 04 2020 - 10:21:10 PDT)
David A Case
Re: [AMBER] xleap
(Tue Sep 29 2020 - 04:52:24 PDT)
Re: [AMBER] xleap
(Mon Sep 28 2020 - 19:06:32 PDT)
Re: [AMBER] Parametrization of GTP and terminal phosphate of DNA
(Mon Sep 28 2020 - 18:50:49 PDT)
Re: [AMBER] Make some of RNA bases as DNA in leap
(Mon Sep 28 2020 - 18:47:12 PDT)
Re: [AMBER] Make some of RNA bases as DNA in leap
(Mon Sep 28 2020 - 09:56:03 PDT)
Re: [AMBER] Fw: covalent molecule and modified residue parameters
(Mon Sep 28 2020 - 05:23:12 PDT)
Re: [AMBER] Fwd: RESTARTED DUE TO LINMIN FAILURE
(Sat Sep 26 2020 - 05:21:38 PDT)
Re: [AMBER] RESTARTED DUE TO LINMIN FAILURE
(Fri Sep 25 2020 - 04:51:20 PDT)
Re: [AMBER] Two sets of restraints on minimization?
(Thu Sep 24 2020 - 17:45:39 PDT)
Re: [AMBER] How does tleap detect improper torsions?
(Thu Sep 24 2020 - 12:20:56 PDT)
Re: [AMBER] Heme parameters
(Thu Sep 24 2020 - 08:05:35 PDT)
Re: [AMBER] How does tleap detect improper torsions?
(Tue Sep 22 2020 - 18:07:01 PDT)
Re: [AMBER] umbrella sampling protein
(Tue Sep 22 2020 - 08:22:11 PDT)
Re: [AMBER] autoimage for grid analysis with cpptraj
(Tue Sep 22 2020 - 05:45:02 PDT)
Re: [AMBER] amber18 installation error
(Tue Sep 22 2020 - 05:41:59 PDT)
Re: [AMBER] antechamber problem with negatively charged nitrogen
(Mon Sep 21 2020 - 05:20:29 PDT)
Re: [AMBER] MMPBSA binding energy was positive for charged ligand
(Mon Sep 21 2020 - 05:14:23 PDT)
Re: [AMBER] antechamber problem with negatively charged nitrogen
(Sun Sep 20 2020 - 07:39:05 PDT)
Re: [AMBER] Perturbing charges
(Sun Sep 20 2020 - 06:01:40 PDT)
Re: [AMBER] RMSF plot error
(Sun Sep 20 2020 - 05:53:24 PDT)
Re: [AMBER] Stuck at the heating stage
(Sat Sep 19 2020 - 05:21:51 PDT)
Re: [AMBER] Formation of a cyclic peptide
(Sat Sep 19 2020 - 05:17:46 PDT)
Re: [AMBER] Mimimization error
(Fri Sep 18 2020 - 18:29:53 PDT)
Re: [AMBER] Problem in AMBER18 Installation
(Fri Sep 18 2020 - 13:43:51 PDT)
Re: [AMBER] Perturbing charges
(Fri Sep 18 2020 - 08:02:40 PDT)
Re: [AMBER] antechamber problem with negatively charged nitrogen
(Fri Sep 18 2020 - 07:58:30 PDT)
Re: [AMBER] expected average fluctuations in amino acid covalent bond distances, angle and torsion during typical md simulations
(Fri Sep 18 2020 - 04:58:57 PDT)
Re: [AMBER] Perturbing charges
(Thu Sep 17 2020 - 19:12:15 PDT)
Re: [AMBER] SHAKEH hydrogen clusters
(Thu Sep 17 2020 - 06:24:55 PDT)
Re: [AMBER] expected average fluctuations in amino acid covalent bond distances, angle and torsion during typical md simulations
(Thu Sep 17 2020 - 05:58:08 PDT)
Re: [AMBER] Tleap creates only one residue
(Thu Sep 17 2020 - 05:45:26 PDT)
Re: [AMBER] expected average fluctuations in amino acid covalent bond distances, angle and torsion during typical md simulations
(Wed Sep 16 2020 - 05:59:05 PDT)
Re: [AMBER] preparing parameter files for a ligand
(Wed Sep 16 2020 - 05:26:30 PDT)
Re: [AMBER] Dynamic cross correlation between the center of mass of two groups of atoms
(Fri Sep 11 2020 - 11:22:32 PDT)
Re: [AMBER] SHAKEH hydrogen clusters
(Fri Sep 11 2020 - 08:27:15 PDT)
Re: [AMBER] Fwd: azobenzene atoms name in amber format
(Fri Sep 11 2020 - 08:24:26 PDT)
Re: [AMBER] Regarding help in installation (LINUX ubuntu)
(Thu Sep 10 2020 - 11:57:29 PDT)
Re: [AMBER] SHAKEH hydrogen clusters
(Thu Sep 10 2020 - 10:07:01 PDT)
Re: [AMBER] Normal Model Analysis with AmberTools20
(Thu Sep 10 2020 - 06:31:19 PDT)
Re: [AMBER] Growing of small molecules instead of annihilation of molecules in amber TI simulations
(Thu Sep 10 2020 - 06:23:14 PDT)
[AMBER] PLUMED masterclass
(Wed Sep 09 2020 - 05:20:09 PDT)
Re: [AMBER] Strange RMSD tower appearing in simulation
(Tue Sep 08 2020 - 11:23:42 PDT)
Re: [AMBER] Cartesian restraints on Production phase
(Tue Sep 08 2020 - 11:18:28 PDT)
Re: [AMBER] Fw: covalent molecule and modified residue parameters
(Mon Sep 07 2020 - 08:57:45 PDT)
Re: [AMBER] Fw: covalent molecule and modified residue parameters
(Mon Sep 07 2020 - 05:47:49 PDT)
Re: [AMBER] Just for info
(Mon Sep 07 2020 - 05:40:20 PDT)
Re: [AMBER] Simulation of 10 ns DNA - ligand intercalation
(Mon Sep 07 2020 - 05:37:07 PDT)
Re: [AMBER] Parametrization of GTP and terminal phosphate of DNA
(Mon Sep 07 2020 - 05:31:56 PDT)
Re: [AMBER] Cyclic peptides in Amber?
(Sat Sep 05 2020 - 11:40:52 PDT)
Re: [AMBER] Amber 18 generates error: an illegal memory access was encountered launching kernel kNLSkinTest
(Fri Sep 04 2020 - 06:21:36 PDT)
Re: [AMBER] Fw: prepare_ligand4.py converts CA carbons to calcium atoms when doing the mol2 to pdbqt format conversion
(Thu Sep 03 2020 - 13:36:59 PDT)
Re: [AMBER] Fw: covalent molecule and modified residue parameters
(Thu Sep 03 2020 - 13:29:03 PDT)
Re: [AMBER] executable names from nab
(Thu Sep 03 2020 - 07:26:30 PDT)
Re: [AMBER] Questions on deriving charges for aromatic compounds using The RESP Method
(Wed Sep 02 2020 - 06:12:47 PDT)
Re: [AMBER] best way to umbrella-sample a pseudo-dihedral angle Collective Variable
(Wed Sep 02 2020 - 06:10:40 PDT)
[AMBER] [MicrosoftExchange329e71ec88ae4615bbc36ab6ce41109e@rutgegetting a nucleic acid helix structure
(Wed Sep 02 2020 - 06:03:58 PDT)
David Cerutti
Re: [AMBER] How to recopile with new version of CUDA
(Mon Sep 21 2020 - 15:05:11 PDT)
Re: [AMBER] Query on nucleic acid force fields
(Wed Sep 16 2020 - 21:28:20 PDT)
Re: [AMBER] Query on nucleic acid force fields
(Wed Sep 16 2020 - 20:35:21 PDT)
Re: [AMBER] Strange RMSD tower appearing in simulation
(Wed Sep 09 2020 - 08:04:06 PDT)
Re: [AMBER] Strange RMSD tower appearing in simulation
(Tue Sep 08 2020 - 09:20:49 PDT)
Re: [AMBER] MCPB with OPC water?
(Tue Sep 08 2020 - 06:32:11 PDT)
Re: [AMBER] How to use the ntb options in amber-cuda-version
(Tue Sep 01 2020 - 00:38:48 PDT)
Debarati DasGupta
Re: [AMBER] Perturbing charges
(Mon Sep 21 2020 - 12:54:35 PDT)
Re: [AMBER] Perturbing charges
(Sun Sep 20 2020 - 13:00:24 PDT)
Re: [AMBER] Growing of small molecules instead of annihilation of molecules in amber TI simulations
(Sat Sep 12 2020 - 06:31:01 PDT)
[AMBER] Growing of small molecules instead of annihilation of molecules in amber TI simulations
(Wed Sep 09 2020 - 15:35:40 PDT)
[AMBER] OE tools help
(Wed Sep 09 2020 - 05:41:04 PDT)
[AMBER] OE Tool kit
(Tue Sep 08 2020 - 11:31:21 PDT)
[AMBER] Molecular creations rather than annihilations in AMBER18/20
(Thu Sep 03 2020 - 15:18:43 PDT)
[AMBER] Molecular creations rather than annihilations in AMBER18/20
(Thu Sep 03 2020 - 15:17:29 PDT)
Delwakkada Liyanage, Senal Dinuka
Re: [AMBER] Perturbing charges
(Mon Sep 21 2020 - 13:16:49 PDT)
Re: [AMBER] Perturbing charges
(Mon Sep 21 2020 - 11:34:56 PDT)
Re: [AMBER] Perturbing charges
(Fri Sep 18 2020 - 14:25:23 PDT)
Re: [AMBER] Perturbing charges
(Fri Sep 18 2020 - 05:57:58 PDT)
[AMBER] Perturbing charges
(Thu Sep 17 2020 - 15:30:08 PDT)
Dickson, Callum
Re: [AMBER] PMF calculation
(Mon Sep 28 2020 - 13:37:53 PDT)
Dmitry Karlov
[AMBER] usage of nmr (between COMs) restraints with pmem.cuda
(Thu Sep 24 2020 - 14:50:48 PDT)
[AMBER] Fwd: usage of nmr (between COMs) restraints with pmem.cuda
(Wed Sep 23 2020 - 08:28:43 PDT)
Dr. Anselm Horn
Re: [AMBER] french version
(Wed Sep 23 2020 - 06:25:41 PDT)
Re: [AMBER] Formation of a cyclic peptide
(Tue Sep 22 2020 - 01:05:59 PDT)
Re: [AMBER] Strange RMSD tower appearing in simulation
(Wed Sep 09 2020 - 01:12:56 PDT)
Re: [AMBER] Adding ions at a particular position
(Wed Sep 09 2020 - 00:57:05 PDT)
ecnu_wangbo
[AMBER] Two problems about Amber's TI totorial
(Tue Sep 01 2020 - 22:43:32 PDT)
Elvis Martis
Re: [AMBER] MMPBSA.py.MPI installation problem in Amber20
(Tue Sep 29 2020 - 00:36:16 PDT)
Re: [AMBER] RESTARTED DUE TO LINMIN FAILURE
(Thu Sep 24 2020 - 21:07:57 PDT)
Re: [AMBER] RESTARTED DUE TO LINMIN FAILURE
(Thu Sep 24 2020 - 20:20:13 PDT)
Re: [AMBER] amber18 installation error
(Tue Sep 22 2020 - 06:00:30 PDT)
Re: [AMBER] amber18 installation error
(Tue Sep 22 2020 - 06:00:00 PDT)
Re: [AMBER] finding number of atoms within a radius
(Mon Sep 07 2020 - 00:05:26 PDT)
Emmett Leddin
Re: [AMBER] Visualizing the system trajectory from .nc file
(Thu Sep 10 2020 - 22:29:18 PDT)
Erdem Yeler
Re: [AMBER] Simulation of 10 ns DNA - ligand intercalation
(Mon Sep 07 2020 - 06:03:47 PDT)
[AMBER] Simulation of 10 ns DNA - ligand intercalation
(Mon Sep 07 2020 - 02:42:23 PDT)
Esposito Carmen
Re: [AMBER] Fw: prepare_ligand4.py converts CA carbons to calcium atoms when doing the mol2 to pdbqt format conversion
(Fri Sep 04 2020 - 01:26:43 PDT)
[AMBER] Fw: prepare_ligand4.py converts CA carbons to calcium atoms when doing the mol2 to pdbqt format conversion
(Wed Sep 02 2020 - 06:17:09 PDT)
Fabian Glaser
[AMBER] umbrella protein-protein
(Wed Sep 02 2020 - 08:02:55 PDT)
Farkhad Maksudov
Re: [AMBER] Tleap creates only one residue
(Thu Sep 17 2020 - 13:25:11 PDT)
[AMBER] Tleap creates only one residue
(Wed Sep 16 2020 - 18:43:58 PDT)
Fatemeh Arabi
[AMBER] RMSF plot error
(Sun Sep 20 2020 - 02:20:17 PDT)
Feng Pan
Re: [AMBER] umbrella sampling protein
(Fri Sep 25 2020 - 06:49:45 PDT)
Re: [AMBER] umbrella sampling protein
(Tue Sep 22 2020 - 12:44:23 PDT)
gagandeep singh
[AMBER] ddikick.x error during Fe3+ ion parameter derivation using Gamess
(Fri Sep 18 2020 - 06:47:15 PDT)
Giorgos Lambrinidis
Re: [AMBER] antechamber problem with negatively charged nitrogen
(Mon Sep 21 2020 - 01:07:01 PDT)
Re: [AMBER] antechamber problem with negatively charged nitrogen
(Fri Sep 18 2020 - 08:29:42 PDT)
[AMBER] antechamber problem with negatively charged nitrogen
(Fri Sep 18 2020 - 04:57:24 PDT)
Gustaf Olsson
Re: [AMBER] xleap
(Tue Sep 29 2020 - 05:45:19 PDT)
Re: [AMBER] xleap
(Tue Sep 29 2020 - 05:22:08 PDT)
Re: [AMBER] xleap
(Tue Sep 29 2020 - 02:43:34 PDT)
Re: [AMBER] xleap
(Tue Sep 29 2020 - 01:17:51 PDT)
Re: [AMBER] xleap
(Thu Sep 24 2020 - 01:16:39 PDT)
Re: [AMBER] xleap
(Thu Sep 24 2020 - 00:04:55 PDT)
Re: [AMBER] autoimage for grid analysis with cpptraj
(Tue Sep 22 2020 - 23:54:44 PDT)
Re: [AMBER] autoimage for grid analysis with cpptraj
(Tue Sep 22 2020 - 06:10:27 PDT)
[AMBER] autoimage for grid analysis with cpptraj
(Tue Sep 22 2020 - 03:05:57 PDT)
Re: [AMBER] amber18 installation error
(Tue Sep 22 2020 - 00:36:14 PDT)
Re: [AMBER] amber18 installation error
(Tue Sep 22 2020 - 00:05:21 PDT)
Re: [AMBER] amber18 installation error
(Mon Sep 21 2020 - 23:54:22 PDT)
Re: [AMBER] error tleap
(Wed Sep 16 2020 - 02:05:01 PDT)
Re: [AMBER] error tleap
(Tue Sep 15 2020 - 05:27:44 PDT)
Re: [AMBER] error tleap
(Thu Sep 10 2020 - 04:28:17 PDT)
Re: [AMBER] antechamber & parmck2
(Thu Sep 10 2020 - 00:31:35 PDT)
Re: [AMBER] error tleap
(Thu Sep 10 2020 - 00:19:27 PDT)
Re: [AMBER] antechamber & parmck2
(Wed Sep 09 2020 - 23:49:53 PDT)
Re: [AMBER] error tleap
(Wed Sep 09 2020 - 05:21:37 PDT)
[AMBER] The status of GAFF2
(Wed Sep 09 2020 - 01:26:00 PDT)
Re: [AMBER] antechamber & parmck2
(Wed Sep 09 2020 - 00:20:13 PDT)
Re: [AMBER] Adding ions at a particular position
(Wed Sep 09 2020 - 00:08:27 PDT)
Re: [AMBER] Generating topology using tleap
(Tue Sep 01 2020 - 23:55:12 PDT)
Re: [AMBER] Enquiry
(Tue Sep 01 2020 - 23:51:28 PDT)
Re: [AMBER] Attention: All CPPTRAJ Questions
(Tue Sep 01 2020 - 00:29:42 PDT)
Gustavo Seabra
Re: [AMBER] Two sets of restraints on minimization?
(Fri Sep 25 2020 - 05:22:03 PDT)
[AMBER] Two sets of restraints on minimization?
(Thu Sep 24 2020 - 13:49:05 PDT)
Re: [AMBER] MCPB with OPC water?
(Fri Sep 11 2020 - 05:46:22 PDT)
Re: [AMBER] MCPB with OPC water?
(Tue Sep 08 2020 - 06:41:28 PDT)
Re: [AMBER] MCPB with OPC water?
(Tue Sep 08 2020 - 06:09:55 PDT)
[AMBER] MCPB with OPC water?
(Thu Sep 03 2020 - 07:24:43 PDT)
h_sahakyan.mb.sci.am
[AMBER] controversy in PBSA and GBSA results
(Wed Sep 30 2020 - 04:42:30 PDT)
[AMBER] Modification of dihedral torsion potential
(Wed Sep 30 2020 - 03:47:07 PDT)
Harley Wilson
[AMBER] Normal Model Analysis with AmberTools20
(Wed Sep 09 2020 - 16:09:46 PDT)
Hashemi, Mohtadin
Re: [AMBER] A100 and RTX3090 Benchmarks
(Wed Sep 30 2020 - 08:43:03 PDT)
Re: [AMBER] 30 Series GPUs from Nvidia
(Thu Sep 03 2020 - 12:22:39 PDT)
Hector A. Baldoni
Re: [AMBER] Fwd: RESTARTED DUE TO LINMIN FAILURE
(Fri Sep 25 2020 - 17:01:49 PDT)
Re: [AMBER] Cluster representation over trajectory
(Mon Sep 07 2020 - 08:36:42 PDT)
[AMBER] Cluster representation over trajectory
(Mon Sep 07 2020 - 06:57:22 PDT)
Homeo Morphism
[AMBER] 30 Series GPUs from Nvidia
(Thu Sep 03 2020 - 07:20:02 PDT)
Jason Swails
Re: [AMBER] MMPBSA.py error for mismatch NATOMS
(Sat Sep 26 2020 - 11:50:12 PDT)
Jatin Kashyap
Re: [AMBER] Visualizing the system trajectory from .nc file
(Mon Sep 14 2020 - 14:08:14 PDT)
[AMBER] Visualizing the system trajectory from .nc file
(Thu Sep 10 2020 - 21:36:21 PDT)
Jenny 148
Re: [AMBER] Parametrization of GTP and terminal phosphate of DNA
(Mon Sep 28 2020 - 09:31:44 PDT)
[AMBER] Netcdf trajectory in pymol?
(Sat Sep 26 2020 - 12:48:53 PDT)
Re: [AMBER] Query on nucleic acid force fields
(Thu Sep 17 2020 - 01:53:11 PDT)
Re: [AMBER] Query on nucleic acid force fields
(Wed Sep 16 2020 - 21:15:16 PDT)
[AMBER] Query on nucleic acid force fields
(Wed Sep 16 2020 - 06:11:38 PDT)
Re: [AMBER] Parametrization of GTP and terminal phosphate of DNA
(Mon Sep 07 2020 - 09:18:03 PDT)
Re: [AMBER] Parametrization of GTP and terminal phosphate of DNA
(Mon Sep 07 2020 - 06:45:54 PDT)
[AMBER] Parametrization of GTP and terminal phosphate of DNA
(Mon Sep 07 2020 - 02:35:31 PDT)
Jiri Sponer
Re: [AMBER] Query on nucleic acid force fields
(Thu Sep 17 2020 - 02:42:20 PDT)
Re: [AMBER] Query on nucleic acid force fields
(Thu Sep 17 2020 - 01:47:13 PDT)
Jisha B
Re: [AMBER] Stuck at the heating stage
(Sat Sep 19 2020 - 03:09:09 PDT)
[AMBER] Stuck at the heating stage
(Sat Sep 19 2020 - 02:53:40 PDT)
Jorden Cabal
[AMBER] Dynamic cross correlation between the center of mass of two groups of atoms
(Fri Sep 11 2020 - 03:56:32 PDT)
Jorge da Rocha
Re: [AMBER] Strange RMSD tower appearing in simulation
(Wed Sep 09 2020 - 05:09:15 PDT)
[AMBER] Strange RMSD tower appearing in simulation
(Tue Sep 08 2020 - 08:42:51 PDT)
Kehinde Idowu
[AMBER] protein-protein interaction plot
(Tue Sep 08 2020 - 13:51:13 PDT)
[AMBER] free binding energy
(Mon Sep 07 2020 - 22:44:34 PDT)
Re: [AMBER] Enquiry
(Tue Sep 01 2020 - 06:12:25 PDT)
[AMBER] Enquiry
(Tue Sep 01 2020 - 02:12:22 PDT)
Kellon Belfon
Re: [AMBER] best way to umbrella-sample a pseudo-dihedral angle Collective Variable
(Wed Sep 02 2020 - 07:27:23 PDT)
Kenneth Huang
Re: [AMBER] Netcdf trajectory in pymol?
(Sun Sep 27 2020 - 15:12:07 PDT)
[AMBER] Cpptraj pucker amplitude units?
(Thu Sep 03 2020 - 11:09:40 PDT)
Kolattukudy P. Santo
Re: [AMBER] constant pH error
(Sat Sep 19 2020 - 20:02:17 PDT)
Re: [AMBER] constant pH error
(Thu Sep 17 2020 - 10:34:55 PDT)
[AMBER] constant pH error
(Wed Sep 16 2020 - 20:18:13 PDT)
Re: [AMBER] cPHMD: how to define residues with two pkas
(Mon Sep 07 2020 - 08:45:31 PDT)
[AMBER] cPHMD: how to define residues with two pkas
(Wed Sep 02 2020 - 19:35:40 PDT)
Liao
[AMBER] MMPBSA.py.MPI installation problem in Amber20
(Tue Sep 29 2020 - 00:22:19 PDT)
Lod King
Re: [AMBER] antechamber & parmck2
(Thu Sep 10 2020 - 00:09:58 PDT)
Re: [AMBER] antechamber & parmck2
(Wed Sep 09 2020 - 07:12:30 PDT)
[AMBER] antechamber & parmck2
(Tue Sep 08 2020 - 18:25:38 PDT)
Re: [AMBER] | ERROR: I could not find enough velocities in 1346.rst7
(Thu Sep 03 2020 - 19:45:13 PDT)
[AMBER] | ERROR: I could not find enough velocities in 1346.rst7
(Thu Sep 03 2020 - 18:03:47 PDT)
Lucas Bandeira
Re: [AMBER] Generating topology using tleap
(Fri Sep 04 2020 - 10:47:41 PDT)
Re: [AMBER] Questions on deriving charges for aromatic compounds using The RESP Method
(Wed Sep 02 2020 - 11:47:45 PDT)
[AMBER] Generating topology using tleap
(Tue Sep 01 2020 - 16:52:03 PDT)
[AMBER] Questions on deriving charges for aromatic compounds using The RESP Method
(Tue Sep 01 2020 - 16:37:54 PDT)
Lucas, Xavier
[AMBER] Amber 18 generates error: an illegal memory access was encountered launching kernel kNLSkinTest
(Tue Sep 01 2020 - 05:52:51 PDT)
Madhur Aggarwal
[AMBER] Query regarding Dialanine peptide 2d ABMD tutorial in the NFE category
(Wed Sep 30 2020 - 02:41:02 PDT)
Maria Bzówka
[AMBER] AQUA-DUCT Webinar 23rd September 2020
(Fri Sep 11 2020 - 06:14:52 PDT)
Maria Nagan
Re: [AMBER] tutorials restructured and ConstpH/redox tutorial pages not accessible
(Wed Sep 23 2020 - 04:08:20 PDT)
Mariangela Dametto
[AMBER] Problem in AMBER18 Installation
(Fri Sep 18 2020 - 08:33:57 PDT)
Mariano Curti
[AMBER] Prmtop for protein + 2 identical ligands has wrong dihedral parameters for the second ligand. LEaP bug?
(Fri Sep 18 2020 - 07:41:26 PDT)
Marko Sever
Re: [AMBER] problem with cpptraj
(Thu Sep 10 2020 - 06:26:52 PDT)
[AMBER] problem with cpptraj
(Thu Sep 10 2020 - 05:57:49 PDT)
Maschietto, Federica
[AMBER] Fwd: RESTARTED DUE TO LINMIN FAILURE
(Fri Sep 25 2020 - 16:52:50 PDT)
Matias Machado
Re: [AMBER] How does tleap detect improper torsions?
(Thu Sep 24 2020 - 20:29:50 PDT)
Re: [AMBER] How does tleap detect improper torsions?
(Wed Sep 23 2020 - 07:24:06 PDT)
Re: [AMBER] Questions (and a small bug report) about SIRAH in Amber
(Tue Sep 01 2020 - 07:38:41 PDT)
Muhammad tariq
[AMBER] How to place oxygen molecules in tunnels of protein to calculate PMF
(Mon Sep 21 2020 - 05:00:21 PDT)
MYRIAN TORRES RICO
Re: [AMBER] error tleap
(Wed Sep 16 2020 - 01:17:40 PDT)
Re: [AMBER] error tleap
(Fri Sep 11 2020 - 03:46:31 PDT)
Re: [AMBER] error tleap
(Thu Sep 10 2020 - 02:38:29 PDT)
Re: [AMBER] error tleap
(Wed Sep 09 2020 - 11:52:24 PDT)
Nada Afiva
Re: [AMBER] MMPBSA binding energy was positive for charged ligand
(Mon Sep 21 2020 - 05:45:28 PDT)
[AMBER] MMPBSA binding energy was positive for charged ligand
(Sun Sep 20 2020 - 19:24:56 PDT)
Re: [AMBER] Combining repeated MD trajectories
(Tue Sep 08 2020 - 03:42:05 PDT)
Re: [AMBER] Combining repeated MD trajectories
(Mon Sep 07 2020 - 23:46:05 PDT)
Re: [AMBER] Combining repeated MD trajectories
(Mon Sep 07 2020 - 18:56:43 PDT)
[AMBER] Combining repeated MD trajectories
(Mon Sep 07 2020 - 16:59:25 PDT)
neildancer
Re: [AMBER] MMPBSA binding energy was positive for charged ligand
(Tue Sep 22 2020 - 06:11:08 PDT)
neildancer.sina.com
Re: [AMBER] How to use the ntb options in amber-cuda-version
(Sun Sep 06 2020 - 03:35:05 PDT)
Re: [AMBER] How to use the ntb options in amber-cuda-version
(Tue Sep 01 2020 - 01:34:08 PDT)
[AMBER] How to use the ntb options in amber-cuda-version
(Mon Aug 31 2020 - 23:32:32 PDT)
Nick Palmer
[AMBER] Conversion of Gromacs [atomtypes] and [nonbond_params] to Amber NONBON and LJEDIT
(Wed Sep 30 2020 - 11:46:28 PDT)
[AMBER] Conversion of Gromacs [atomtypes] and [nonbond_params] to Amber NONBON and LJEDIT
(Wed Sep 30 2020 - 09:40:08 PDT)
Nisha Amarnath Jonniya
[AMBER] how to keep Cl/Br/I ion in particular place
(Tue Sep 22 2020 - 22:06:40 PDT)
Re: [AMBER] amber18 installation error
(Tue Sep 22 2020 - 06:03:14 PDT)
Re: [AMBER] amber18 installation error
(Tue Sep 22 2020 - 00:11:09 PDT)
Re: [AMBER] amber18 installation error
(Mon Sep 21 2020 - 23:59:00 PDT)
[AMBER] amber18 installation error
(Mon Sep 21 2020 - 22:22:37 PDT)
[AMBER] BR atom moved out
(Thu Sep 17 2020 - 03:46:19 PDT)
Pengfei Li
Re: [AMBER] MCPB with OPC water?
(Thu Sep 10 2020 - 14:06:17 PDT)
Re: [AMBER] MCPB parametrization for an RNA systems
(Thu Sep 10 2020 - 13:49:28 PDT)
Re: [AMBER] How to deal with oxygen atom on Fe=O of Compound I (heme enzyme, P450)
(Thu Sep 10 2020 - 13:27:39 PDT)
Re: [AMBER] How to deal with oxygen atom on Fe=O of Compound I (heme enzyme, P450)
(Thu Sep 10 2020 - 13:25:21 PDT)
Re: [AMBER] Refitting charges with MCPB destabilizes the active site
(Thu Sep 10 2020 - 13:19:01 PDT)
Pietro Aronica
[AMBER] SHAKEH hydrogen clusters
(Thu Sep 10 2020 - 05:19:39 PDT)
pietroa.bii.a-star.edu.sg
Re: [AMBER] SHAKEH hydrogen clusters
(Fri Sep 11 2020 - 22:30:55 PDT)
Re: [AMBER] SHAKEH hydrogen clusters
(Thu Sep 10 2020 - 19:16:20 PDT)
proszx
[AMBER] Is it possible to run QM/MM-PIMD simulations with sander?
(Wed Sep 16 2020 - 02:10:52 PDT)
R A Jeyaram 16PHD0482
[AMBER] water strip -reg
(Thu Sep 24 2020 - 02:24:30 PDT)
[AMBER] Coordinate resetting cannot be accomplished -reg
(Wed Sep 23 2020 - 03:38:09 PDT)
Raman Preet Singh
Re: [AMBER] Regarding help in installation (LINUX ubuntu)
(Fri Sep 11 2020 - 01:19:04 PDT)
Re: [AMBER] OE tools help
(Thu Sep 10 2020 - 02:58:58 PDT)
Re: [AMBER] OE tools help
(Thu Sep 10 2020 - 02:36:25 PDT)
Re: [AMBER] OE Tool kit
(Wed Sep 09 2020 - 02:48:36 PDT)
Ramanathan Rajesh
[AMBER] Line minimizer aborted
(Thu Sep 24 2020 - 07:34:34 PDT)
Ramin Mehrani
Re: [AMBER] umbrella sampling protein
(Wed Sep 23 2020 - 06:56:21 PDT)
[AMBER] umbrella sampling protein
(Tue Sep 22 2020 - 07:02:42 PDT)
Ray Luo
Re: [AMBER] controversy in PBSA and GBSA results
(Wed Sep 30 2020 - 22:10:53 PDT)
Re: [AMBER] controversy in PBSA and GBSA results
(Wed Sep 30 2020 - 15:57:45 PDT)
Re: [AMBER] "nan" appeared in mmpbsa result
(Tue Sep 08 2020 - 11:46:43 PDT)
Renato Araujo
[AMBER] Mimimization error
(Fri Sep 18 2020 - 14:29:10 PDT)
RIMJHIM MORAL
[AMBER] Formation of a cyclic peptide
(Sat Sep 19 2020 - 00:58:07 PDT)
Rodrigo Galindo-Murillo
Re: [AMBER] Combining repeated MD trajectories
(Mon Sep 07 2020 - 19:51:33 PDT)
Re: [AMBER] AmberHub down ?
(Mon Sep 07 2020 - 17:34:35 PDT)
Ross Walker
[AMBER] A100 and RTX3090 Benchmarks
(Sun Sep 27 2020 - 16:30:47 PDT)
Saikat Pal
Re: [AMBER] RMSD of nucleic acid bases
(Thu Sep 17 2020 - 23:10:42 PDT)
Re: [AMBER] finding number of atoms within a radius
(Mon Sep 07 2020 - 01:50:06 PDT)
[AMBER] finding number of atoms within a radius
(Sun Sep 06 2020 - 22:25:51 PDT)
Sarah Jane
Re: [AMBER] Fw: covalent molecule and modified residue parameters
(Mon Sep 28 2020 - 05:51:58 PDT)
Re: [AMBER] Fw: covalent molecule and modified residue parameters
(Sun Sep 27 2020 - 17:15:48 PDT)
Re: [AMBER] Fw: covalent molecule and modified residue parameters
(Wed Sep 09 2020 - 05:22:21 PDT)
Re: [AMBER] Fw: covalent molecule and modified residue parameters
(Mon Sep 07 2020 - 08:09:36 PDT)
Re: [AMBER] Fw: covalent molecule and modified residue parameters
(Mon Sep 07 2020 - 04:20:19 PDT)
Re: [AMBER] Fw: covalent molecule and modified residue parameters
(Thu Sep 03 2020 - 08:21:03 PDT)
SATYAJIT KHATUA
[AMBER] Tri-coordination environment in zinc
(Sat Sep 19 2020 - 22:07:15 PDT)
[AMBER] constant pH MD in explicit solvent
(Sat Sep 19 2020 - 21:59:31 PDT)
[AMBER] Tri-coordination environment in zinc
(Fri Sep 18 2020 - 21:36:59 PDT)
[AMBER] constant pH MD in explicit solvent
(Fri Sep 18 2020 - 06:43:58 PDT)
[AMBER] constant pH MD in explicit solvent
(Mon Sep 14 2020 - 00:13:17 PDT)
Re: [AMBER] AMBER Digest, Vol 3114, Issue 1
(Wed Sep 09 2020 - 09:09:06 PDT)
[AMBER] constant pH MD in explicit solvent
(Sat Sep 05 2020 - 00:15:59 PDT)
Setyanto Md
[AMBER] Is RTX 3080 compatible with Amber18 ?
(Fri Sep 18 2020 - 20:36:59 PDT)
Re: [AMBER] Combining repeated MD trajectories
(Tue Sep 08 2020 - 02:53:16 PDT)
Re: [AMBER] AmberHub down ?
(Mon Sep 07 2020 - 17:39:14 PDT)
[AMBER] AmberHub down ?
(Mon Sep 07 2020 - 17:24:59 PDT)
SHAUNAK BADANI
[AMBER] Query regarding Dialanine peptide 2d ABMD tutorial in the NFE category
(Tue Sep 29 2020 - 02:15:46 PDT)
[AMBER] Polyproline abmd tutorial gives vlimit error
(Mon Sep 28 2020 - 09:32:28 PDT)
Siavoush Dastmalchi
[AMBER] Problem with metalpdb2mol2.py script
(Wed Sep 30 2020 - 00:56:02 PDT)
Re: [AMBER] Heme parameters
(Thu Sep 24 2020 - 09:35:29 PDT)
[AMBER] Heme parameters
(Wed Sep 23 2020 - 08:00:19 PDT)
Re: [AMBER] preparing parameter files for a ligand
(Wed Sep 16 2020 - 06:07:22 PDT)
[AMBER] preparing parameter files for a ligand
(Tue Sep 15 2020 - 09:34:27 PDT)
somdev pahari
Re: [AMBER] PMF calculation
(Tue Sep 29 2020 - 11:20:19 PDT)
[AMBER] PMF calculation
(Tue Sep 29 2020 - 01:25:15 PDT)
Song, Lin
Re: [AMBER] free binding energy
(Tue Sep 08 2020 - 01:33:04 PDT)
Re: [AMBER] Combining repeated MD trajectories
(Mon Sep 07 2020 - 18:23:06 PDT)
Sruthi Sudhakar
[AMBER] RMSD of nucleic acid bases
(Thu Sep 17 2020 - 21:05:18 PDT)
Stephan Schott
Re: [AMBER] adding lysyl-phosphatidylglycerol and cardiolipin
(Wed Sep 23 2020 - 08:33:07 PDT)
swapnil singh
[AMBER] Regarding help in installation (LINUX ubuntu)
(Thu Sep 10 2020 - 08:13:16 PDT)
Vaibhav Dixit
Re: [AMBER] AmberMdPrep github cpptraj not sourced
(Wed Sep 30 2020 - 09:00:53 PDT)
Re: [AMBER] AmberMdPrep github cpptraj not sourced
(Wed Sep 30 2020 - 06:53:10 PDT)
Re: [AMBER] AmberMdPrep github cpptraj not sourced
(Wed Sep 30 2020 - 04:54:05 PDT)
[AMBER] AmberMdPrep github cpptraj not sourced
(Tue Sep 29 2020 - 23:49:25 PDT)
Re: [AMBER] tutorials restructured and ConstpH/redox tutorial pages not accessible
(Wed Sep 23 2020 - 08:01:21 PDT)
Re: [AMBER] tutorials restructured and ConstpH/redox tutorial pages not accessible
(Wed Sep 23 2020 - 04:46:37 PDT)
[AMBER] tutorials restructured and ConstpH/redox tutorial pages not accessible
(Tue Sep 22 2020 - 23:49:04 PDT)
Re: [AMBER] How to deal with oxygen atom on Fe=O of Compound I (heme enzyme, P450)
(Sat Sep 19 2020 - 23:54:31 PDT)
Re: [AMBER] expected average fluctuations in amino acid covalent bond distances, angle and torsion during typical md simulations
(Fri Sep 18 2020 - 09:37:38 PDT)
Re: [AMBER] expected average fluctuations in amino acid covalent bond distances, angle and torsion during typical md simulations
(Fri Sep 18 2020 - 02:24:46 PDT)
Re: [AMBER] expected average fluctuations in amino acid covalent bond distances, angle and torsion during typical md simulations
(Thu Sep 17 2020 - 10:07:44 PDT)
Re: [AMBER] expected average fluctuations in amino acid covalent bond distances, angle and torsion during typical md simulations
(Wed Sep 16 2020 - 08:39:41 PDT)
[AMBER] expected average fluctuations in amino acid covalent bond distances, angle and torsion during typical md simulations
(Tue Sep 15 2020 - 11:57:54 PDT)
Re: [AMBER] How to deal with oxygen atom on Fe=O of Compound I (heme enzyme, P450)
(Sat Sep 12 2020 - 04:29:46 PDT)
Re: [AMBER] How to deal with oxygen atom on Fe=O of Compound I (heme enzyme, P450)
(Fri Sep 11 2020 - 19:21:07 PDT)
Xinye Wang
Re: [AMBER] RESTARTED DUE TO LINMIN FAILURE
(Thu Sep 24 2020 - 20:38:41 PDT)
[AMBER] RESTARTED DUE TO LINMIN FAILURE
(Thu Sep 24 2020 - 20:06:32 PDT)
[AMBER] "nan" appeared in mmpbsa result
(Tue Sep 08 2020 - 03:32:44 PDT)
xmgign.126.com
Re: [AMBER] A100 and RTX3090 Benchmarks
(Tue Sep 29 2020 - 02:29:46 PDT)
zmatovic.kg.ac.rs
[AMBER] Dextrins
(Fri Sep 11 2020 - 02:24:20 PDT)
Zoran
Re: [AMBER] Tri-coordination environment in zinc
(Fri Sep 18 2020 - 23:50:12 PDT)
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Wed Sep 30 2020 - 22:30:02 PDT
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: Mon Nov 25 2024 - 05:55:54 PST
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