Re: [AMBER] Combining repeated MD trajectories

From: Rodrigo Galindo-Murillo <rodrigogalindo.gmail.com>
Date: Mon, 7 Sep 2020 20:51:33 -0600

Hello!
You can follow this tutorial:

https://amberhub.chpc.utah.edu/combining-multiple-trajectory-files-into-a-single-trajectory-and-remove-water-molecules-to-save-space/

to combine your trajectories.

Best,
Rodrigo.

On Mon, Sep 7, 2020 at 5:59 PM Nada Afiva <nadaafiva.gmail.com> wrote:
>
> Dear Amber,
> I run 100 ns MD and then I repeated it 2 times, so I have 3 trajectories
> for the same system.
> Now I want to combine the 3 trajectories into one single trajectory and I
> will use the single combined trajectory
> to calculate the RMSD ad other analyses.
> Please let me know how to combine the 3 trajectories into one single
> trajectory.
> Thank you.
>
> Best regards,
> Nadaafiva
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Received on Mon Sep 07 2020 - 20:00:02 PDT