Dear Rodrigo,
Thanks so much for your help.
However I have done the same procedure with the tutorial, and the RMSD plot
is not what I want as
I explained in the previous email.
Thank you.
Best wishes,
Nadaafiva
Pada tanggal Sel, 8 Sep 2020 pukul 09.52 Rodrigo Galindo-Murillo <
rodrigogalindo.gmail.com> menulis:
> Hello!
> You can follow this tutorial:
>
>
> https://amberhub.chpc.utah.edu/combining-multiple-trajectory-files-into-a-single-trajectory-and-remove-water-molecules-to-save-space/
>
> to combine your trajectories.
>
> Best,
> Rodrigo.
>
> On Mon, Sep 7, 2020 at 5:59 PM Nada Afiva <nadaafiva.gmail.com> wrote:
> >
> > Dear Amber,
> > I run 100 ns MD and then I repeated it 2 times, so I have 3 trajectories
> > for the same system.
> > Now I want to combine the 3 trajectories into one single trajectory and I
> > will use the single combined trajectory
> > to calculate the RMSD ad other analyses.
> > Please let me know how to combine the 3 trajectories into one single
> > trajectory.
> > Thank you.
> >
> > Best regards,
> > Nadaafiva
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> > http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Tue Sep 08 2020 - 00:00:02 PDT
