Re: [AMBER] amber18 installation error

From: Elvis Martis <elvis_bcp.elvismartis.in>
Date: Tue, 22 Sep 2020 18:30:00 +0530

Hi
I could install ambertools18 and ambertools20 in ubuntu 20.04 (windows WSL)
with any issues.
I would suggest deleting the amber20 folder and untar it again and retry
compiling.
Best Regards
Elvis



On Tue, 22 Sep 2020 at 18:14, David A Case <david.case.rutgers.edu> wrote:

> On Tue, Sep 22, 2020, Nisha Amarnath Jonniya wrote:
>
> >I am using ubuntu 20.04.1 , 64-bit and a gnu compiler.
> >
> >> > *This is the content of the log file:*
> >> >
> >> > config.status: error: in
> >> > `/home/nisha/software/amber/amber18/AmberTools/src/netcdf-4.6.1':
> >> > config.status: error: Something went wrong bootstrapping makefile
> >> fragments
> >> > for automatic dependency tracking. Try re-running configure with
> the
> >> > '--disable-dependency-tracking' option to at least be able to build
> >> > the package (albeit without support for automatic dependency
> >> tracking).
>
> Wow...I've never seen this error before. Just to be complete here, what
> is the result of typing "gcc --version"?
>
> Do you have the ability to try to build Amber on a different machine?
>
> It would be great if someone on the list has the time to try to build
> amber18 on Ubunutu 20.04. But I'm guessing that this error is going to
> be hard to reproduce. I configure netCDF the "old" way on Ubuntu20.04
> all the time, and have not encountered this problem.
>
> Note: in order to try the fix recommended in the error message above,
> you would need to edit the $AMBERHOME/AmberTools/src/configure2 script,
> find the place where netcdf is configured, and add the suggested flag
> there. Then, re-run configure from $AMBERHOME.
>
> ....regards...dac
>
>
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Received on Tue Sep 22 2020 - 06:30:02 PDT
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