[AMBER] Parametrization of GTP and terminal phosphate of DNA

From: Jenny 148 <jenny.rs140.gmail.com>
Date: Mon, 7 Sep 2020 15:05:31 +0530

Dear all,

I have a few systems of RNA- protein and DNA- protein complexes to work
with. My RNA strands begin with a GTP and since I am a beginner, I do not
know how to parametrize the GTP when it is in part of an RNA. Similarly, I
need to know how to include the 5' terminal phosphates of the DNA as well.
Could someone give some guidance regarding how to perform these tasks?
Thanking you,
AMBER mailing list
Received on Mon Sep 07 2020 - 03:00:02 PDT
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