[AMBER] Parametrization of GTP and terminal phosphate of DNA

From: Jenny 148 <jenny.rs140.gmail.com>
Date: Mon, 7 Sep 2020 15:05:31 +0530

Dear all,

I have a few systems of RNA- protein and DNA- protein complexes to work
with. My RNA strands begin with a GTP and since I am a beginner, I do not
know how to parametrize the GTP when it is in part of an RNA. Similarly, I
need to know how to include the 5' terminal phosphates of the DNA as well.
Could someone give some guidance regarding how to perform these tasks?
Thanking you,
Jenny
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Received on Mon Sep 07 2020 - 03:00:02 PDT
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