[AMBER] tutorials restructured and ConstpH/redox tutorial pages not accessible

From: Vaibhav Dixit <vaibhavadixit.gmail.com>
Date: Wed, 23 Sep 2020 12:19:04 +0530

Dear Amber developers/webmaster,
I observed that the main-tutorial page has been restructured since I
visited a couple of months ago. This is excellent as it looks more/better
structured now.
A great thanks to the Amber team.
Are you considering to add another section useful for self-(re)training on
the *basics of minimization, and heating steps*?
Currently, after system setup/non-standard residue, there is a section
directly on running MD.
Please redirect me to the relevant tutorial if these are already discussed
at length somewhere that I missed (I keep forgetting the imp of various
I'm simulating a system where the E has not minimized even after 4-5 steps,
the E as seen with mdout_analyzer keep getting lower. Thus I think I need a
refresher in the basics, but I can't find such tutorial easily.

Additionally, I'm unable to access the constant pH and Redox potential
tutorial sections as shown below.
Please redirect if there are new pages for the same.

Thank you and best regards

[image: image.png]

Dr. Vaibhav A. Dixit,
Assistant Professor,
Department of Pharmacy,
Birla Institute of Technology and Sciences Pilani (BITS-Pilani),
VidyaVihar Campus, street number 41, Pilani, Rajasthan 333031.
Phone No. +91 1596 255652, Mob. No. +91-7709129400,
Email: vaibhav.dixit.pilani.bits-pilani.ac.in, vaibhavadixit.gmail.com
ORCID ID: https://orcid.org/0000-0003-4015-2941
P Please consider the environment before printing this e-mail

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Received on Wed Sep 23 2020 - 00:00:02 PDT
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