Re: [AMBER] Make some of RNA bases as DNA in leap

From: Athena N <athena.nas01.gmail.com>
Date: Mon, 28 Sep 2020 22:27:57 +0530

Sir,
Would the 2’-OH of the RNA read as H in such cases?

On Mon, 28 Sep 2020 at 10:26 PM, David A Case <david.case.rutgers.edu>
wrote:

> On Mon, Sep 28, 2020, Athena N wrote:
>
> >
>
> >I have a 20 nt sequence of an RNA in which I want to make the nucleotides
>
> >4-7 as DNA. Is it possible to make this in Leap? Should I just change the
>
> >name of the bases from U as DT and A as DA and try to load them in Leap?
>
>
>
> yes....dac
>
>
>
>
>
> _______________________________________________
>
> AMBER mailing list
>
> AMBER.ambermd.org
>
> http://lists.ambermd.org/mailman/listinfo/amber
>
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Sep 28 2020 - 10:00:04 PDT
Custom Search