Dear Amber Users,
Is it possible to strip water from both topology and
trajectory?. Actually I am using following commands to strip two water
molecules. I successfully stripped the water from topology, but I am unable
to strip water from the trajectory file. Thanks in advance.
Commands:
cpptraj -p 1.prmtop
parmstrip :WAT&(:11806-11807)
parmwrite out wat_strip.prmtop
run
quit
cpptraj -p 1.prmtop
trajin 1.crd
strip :WAT&(:11806-11807)
trajout wat_strip.crd
run
with regards,
R. A. Jeyaram
Vellore Institute of Technology
Tamil Nadu, India.
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Received on Thu Sep 24 2020 - 02:30:02 PDT
