[AMBER] Enquiry

From: Kehinde Idowu <kidowu93.yahoo.com>
Date: Tue, 1 Sep 2020 09:12:22 +0000 (UTC)

> Good day all

> Please, I am running a protein-protein md simulation onAmber 18

> my md is being terminated, here is this error message Igot from my md_error file “TOP PMEMD Terminated Abnormally!”

> My md.in looks as follow;

 

>Equilibration Step of MMP3 (MMMM): stage-1

 &cntrl

>imin= 0,

  iwrap=1,

  irest=0,

  NTX=1,

  ntb=2,

  ntp=1,

  PRES0=1.0,

  TAUP=2.0,

  NTPR=500,

  NTWX=500,

  NTWR=500,

  ntr=0,

  Tempi=300.0,

  Temp0=300.0,

  NTT=3,

  gamma_ln=1.0,

  NTC=2,

  NTF=2,

  cut=12.0,

  nstlim=10000000,

  dt=0.002,

  ntxo=1,

  ioutfm=0,

 /

 

Kindly advice on how to solve this problem.

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Received on Tue Sep 01 2020 - 02:30:02 PDT
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