[AMBER] RMSD do not increase with the increase of temperature

From: ali akbar <akbar2181.gmail.com>
Date: Sat, 5 Sep 2020 12:30:37 +0430

Dear all,
For testing the possible thermal stability of a protein upon point
mutation, we conducted MD simulation at 283, 298, 310 and 323K. We expected
an increase in RMSD values upon increasing temperature. However, this
effect was not seen in some mutations and some temperatures. What can be
the reason?Do we have problems in MD running?
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Received on Sat Sep 05 2020 - 01:30:02 PDT
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