It sounds like you don't have the amber environment. Look into sourcing
amber.sh to get that into the notebook; I haven't used one yet.
Bill
On 9/7/20 3:03 AM, aishen wrote:
> Hi,
>
>
> Everything is going much better, so I decided to run tutorial in jupyter
> notebook, so far no real problem, amber tutorials are well done
> (thanks), when I run
>
> !$AMBERHOME/bin/ambpdb -p TC5b.prmtop -c min1.ncrst > min1.pdb
>
> the answer is : /bin/bash: /bin/ambpdb: Aucun fichier ou dossier de ce type
>
> but the files are done ! Is it normal ?
>
> Every command has this kind of answer so at the beginning I thaught I
> did something wrong but I realised files were done !
>
> I guess this is a jupyter answer ?
>
> regards
>
> Henri
>
>
>
>
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Received on Mon Sep 07 2020 - 03:30:02 PDT
