[AMBER] Formation of a cyclic peptide

From: RIMJHIM MORAL <r.moral.iitg.ac.in>
Date: Sat, 19 Sep 2020 07:58:07 +0000

Dear all,

           I am trying to generate a pdb of a cyclic peptide. I am using the command "bond m.1.N m.8.C" (m is the defined name of the pdb in xleap) to form the bond between the terminal residues but after saving the pdb, it is automatically being converted into the free terminals. Please suggest me if there is any other way to do the same. Thank you in advance.
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Received on Sat Sep 19 2020 - 01:00:01 PDT