Amber Archive Dec 2014: by author

Abhilash J
- Re: [AMBER] Enthalpy calculation of protein. (Sun Dec 28 2014 - 21:09:32 PST)
- Re: [AMBER] Enthalpy calculation of protein. (Sun Dec 28 2014 - 07:30:17 PST)
- [AMBER] Enthalpy calculation of protein. (Sat Dec 27 2014 - 23:42:46 PST)
Abhishek TYAGI
- Re: [AMBER] MMPBSA-ERROR for firstmolecule-dna (Sat Dec 20 2014 - 22:57:52 PST)
- Re: [AMBER] MMPBSA-ERROR for firstmolecule-dna (Fri Dec 19 2014 - 01:14:49 PST)
- Re: [AMBER] MMPBSA-ERROR for firstmolecule-dna (Tue Dec 16 2014 - 19:56:30 PST)
- Re: [AMBER] MMPBSA-ERROR for firstmolecule-dna (Mon Dec 15 2014 - 03:03:41 PST)
- Re: [AMBER] MMPBSA-ERROR for firstmolecule-dna (Fri Dec 12 2014 - 23:48:14 PST)
- [AMBER] MMPBSA-ERROR for firstmolecule-dna (Wed Dec 10 2014 - 19:05:46 PST)
- Re: [AMBER] CHAMBER error (Thu Dec 04 2014 - 19:25:06 PST)
Aditya Sarkar
- Re: [AMBER] Problem with simulation of protein-DNA complex (Mon Dec 15 2014 - 03:10:59 PST)
- Re: [AMBER] Problem with simulation of protein-DNA complex (Fri Dec 12 2014 - 22:12:52 PST)
- [AMBER] Problem with simulation of protein-DNA complex (Fri Dec 12 2014 - 00:49:20 PST)
Adrian Roitberg
- Re: [AMBER] amber14 CUDA GPU for workstation? (Tue Dec 30 2014 - 12:56:31 PST)
- Re: [AMBER] Total energy of system is positive (Mon Dec 29 2014 - 14:29:33 PST)
Ahmet yıldırım
- Re: [AMBER] antechamber script (Mon Dec 22 2014 - 15:10:10 PST)
- Re: [AMBER] antechamber script (Mon Dec 22 2014 - 10:10:11 PST)
- [AMBER] antechamber script (Mon Dec 22 2014 - 07:05:48 PST)
- [AMBER] getting the input files for antechamber (Tue Dec 09 2014 - 11:49:05 PST)
Akihiro Yamane
- Re: [AMBER] Optimization under restraint atoms using ibelly option (Thu Dec 18 2014 - 04:09:11 PST)
- [AMBER] Optimization under restraint atoms using ibelly option (Mon Dec 15 2014 - 04:12:08 PST)
aksbmbg_s.caluniv.ac.in
- Re: [AMBER] error in parallel installation of Amber 12 with AmberTools13 (Wed Dec 17 2014 - 02:53:33 PST)
- Re: [AMBER] conversion of AMBER trajectory to Gromacs trajectory (Fri Dec 12 2014 - 23:25:45 PST)
- Re: [AMBER] change the mode of my AMBER mail list from digest to normal (Fri Dec 12 2014 - 04:02:51 PST)
- Re: [AMBER] AmberTools14/Amber10 (Fri Dec 12 2014 - 03:56:49 PST)
- Re: [AMBER] AmberTools14/Amber10 (Fri Dec 12 2014 - 03:54:12 PST)
Alan
- Re: [AMBER] error in install amber (Sun Dec 21 2014 - 13:55:02 PST)
Aldo Segura
- Re: [AMBER] TLEAP issues (Wed Dec 10 2014 - 07:23:52 PST)
- Re: [AMBER] Instructions on How to install Amber on Suse Linux (Mon Dec 08 2014 - 12:54:39 PST)
- Re: [AMBER] error creating mol2 files (Fri Dec 05 2014 - 12:49:45 PST)
- Re: [AMBER] error creating mol2 files (Fri Dec 05 2014 - 11:59:01 PST)
- Re: [AMBER] error creating mol2 files (Fri Dec 05 2014 - 10:05:38 PST)
- Re: [AMBER] error creating mol2 files (Fri Dec 05 2014 - 08:54:04 PST)
- Re: [AMBER] Docking with Dock6 (Thu Dec 04 2014 - 10:14:22 PST)
Andreas Goetz
- Re: [AMBER] PM6-DH+ simulation problem (Thu Dec 11 2014 - 15:51:14 PST)
aneesh cna
- Re: [AMBER] Enthalpy calculation of protein. (Sun Dec 28 2014 - 21:05:10 PST)
antonio.coluccia.uniroma1.it
- Re: [AMBER] target dynamics problem (Mon Dec 22 2014 - 06:37:44 PST)
- Re: [AMBER] target dynamics problem (Mon Dec 22 2014 - 05:52:57 PST)
- [AMBER] target dynamics problem (Mon Dec 22 2014 - 05:31:20 PST)
Anupam Goel
- Re: [AMBER] error running equilibration (wall clock called) (Wed Dec 17 2014 - 13:50:42 PST)
- [AMBER] error running equilibration (wall clock called) (Wed Dec 17 2014 - 11:41:00 PST)
- [AMBER] error while saving prmtop and inpcrd (Mon Dec 15 2014 - 14:38:07 PST)
- Re: [AMBER] error creating mol2 files (Fri Dec 05 2014 - 12:51:31 PST)
- Re: [AMBER] error creating mol2 files (Fri Dec 05 2014 - 12:41:10 PST)
- Re: [AMBER] error creating mol2 files (Fri Dec 05 2014 - 10:35:13 PST)
- Re: [AMBER] error creating mol2 files (Fri Dec 05 2014 - 10:34:32 PST)
- Re: [AMBER] error creating mol2 files (Fri Dec 05 2014 - 09:16:58 PST)
- [AMBER] error creating mol2 files (Fri Dec 05 2014 - 08:26:13 PST)
Aron Broom
- Re: [AMBER] On the significant dG error in the MMGBSA results.dat (Fri Dec 05 2014 - 07:19:34 PST)
- Re: [AMBER] On the significant dG error in the MMGBSA results.dat (Wed Dec 03 2014 - 06:50:20 PST)
- Re: [AMBER] On the significant dG error in the MMGBSA results.dat (Tue Dec 02 2014 - 15:35:47 PST)
Aronica, Pietro
- Re: [AMBER] LEaP Error (Mon Dec 01 2014 - 14:21:12 PST)
- Re: [AMBER] LEaP Error (Mon Dec 01 2014 - 14:00:17 PST)
- [AMBER] LEaP Error (Mon Dec 01 2014 - 03:23:28 PST)
asdda asa
- Re: [AMBER] Monitoring pi-cationic interaction (Sun Nov 30 2014 - 19:37:03 PST)
Asmita Gupta
- Re: [AMBER] accelerated MD set up (Tue Dec 02 2014 - 07:43:19 PST)
- [AMBER] accelerated MD set up (Tue Dec 02 2014 - 03:15:27 PST)
Atila Petrosian
- [AMBER] MM-PBSA (addions) (Fri Dec 12 2014 - 04:54:15 PST)
- [AMBER] MM-PBSA (addions) (Fri Dec 12 2014 - 03:20:02 PST)
- [AMBER] Antechamber problem (Mon Dec 08 2014 - 22:49:45 PST)
Ayesha Fatima
- Re: [AMBER] Help regarding error in top n crd generation (Thu Dec 04 2014 - 03:37:05 PST)
Baker D.J.
- [AMBER] Amber 12 on K20 GPUs -- how am I doing? (Tue Dec 16 2014 - 04:22:22 PST)
Bence Hégely
- [AMBER] Singe point QM/MM energy using Gaussian interface (Sun Dec 21 2014 - 10:37:43 PST)
BERGY
- Re: [AMBER] PCA 2dprojection with xtal data and energy information (Tue Dec 16 2014 - 21:47:42 PST)
- Re: [AMBER] PCA 2dprojection with xtal data and energy information (Tue Dec 16 2014 - 13:23:52 PST)
- Re: [AMBER] PCA 2dprojection with xtal data and energy information (Sat Dec 13 2014 - 18:45:17 PST)
- [AMBER] PCA 2dprojection with xtal data and energy information (Sat Dec 13 2014 - 14:39:58 PST)
- Re: [AMBER] how to retain the MG++ coordination geometry during simulation (Tue Dec 02 2014 - 13:42:17 PST)
- [AMBER] how to retain the MG++ coordination geometry during simulation (Tue Dec 02 2014 - 11:59:57 PST)
Bill Ross
- Re: [AMBER] pmemd.MPI fails to run (Sun Dec 28 2014 - 20:19:14 PST)
- Re: [AMBER] antechamber script (Mon Dec 22 2014 - 08:39:18 PST)
- Re: [AMBER] Fwd: leap crashes and set: Improper number of arguments! (Wed Dec 17 2014 - 18:16:03 PST)
Brittany Boykin
- [AMBER] Linker Attached to DNA (Tue Dec 02 2014 - 13:58:41 PST)
Carlo Guardiani
- Re: [AMBER] Failure to restart H-REMD (Wed Dec 10 2014 - 07:27:41 PST)
- [AMBER] Failure to restart H-REMD (Wed Dec 10 2014 - 01:57:03 PST)
- [AMBER] Problems with implicit solvent (Fri Dec 05 2014 - 03:11:56 PST)
Carlos Simmerling
- Re: [AMBER] Need help in Targeted MD (Wed Dec 31 2014 - 06:55:15 PST)
- Re: [AMBER] a problem in MM-GBSA calculation (Tue Dec 23 2014 - 05:31:45 PST)
- Re: [AMBER] Missing psi dihedral at cationic N-terminus of protein/peptide? (Mon Dec 22 2014 - 15:38:48 PST)
- Re: [AMBER] Umbrella sampling for molecules moving (Mon Dec 22 2014 - 15:36:42 PST)
- Re: [AMBER] target dynamics problem (Mon Dec 22 2014 - 09:51:41 PST)
- Re: [AMBER] target dynamics problem (Mon Dec 22 2014 - 06:05:49 PST)
- Re: [AMBER] target dynamics problem (Mon Dec 22 2014 - 05:42:09 PST)
- Re: [AMBER] How to analyze REMD results (Sun Dec 21 2014 - 19:10:59 PST)
- Re: [AMBER] Free energy landscape (Thu Dec 11 2014 - 06:08:55 PST)
- Re: [AMBER] single strand DNA (Mon Dec 08 2014 - 06:09:57 PST)
- Re: [AMBER] Problems with implicit solvent (Fri Dec 05 2014 - 03:53:08 PST)
CHAMI F.
- [AMBER] 8Mureabox URE residue unknown (Sat Dec 13 2014 - 06:13:21 PST)
chandan patel
- Re: [AMBER] Linker Attached to DNA (Tue Dec 02 2014 - 16:24:58 PST)
chemjxn
- [AMBER] ifqnt (Tue Dec 23 2014 - 18:24:56 PST)
chemjxn.126.com
- Re: [AMBER] ifqnt (Tue Dec 23 2014 - 22:06:20 PST)
- Re: [AMBER] ifqnt (Tue Dec 23 2014 - 20:12:54 PST)
Chris Gao
- [AMBER] Is BUG in cpptraj of version 14?? (Wed Dec 10 2014 - 22:51:43 PST)
Chris Moth
- Re: [AMBER] AmberTools suppose program (Tue Dec 09 2014 - 13:50:14 PST)
Christina Bergonzo
- Re: [AMBER] phosphoserine parameters (Tue Dec 16 2014 - 07:24:36 PST)
Dabing Chen
- [AMBER] help on the AMBER Tutorial B0 (Thu Dec 18 2014 - 08:37:52 PST)
Dailin Li
- [AMBER] Problems with amber14 intallation in parallel (Sat Dec 06 2014 - 17:42:10 PST)
- [AMBER] Problems with amber14 intallation in parallel (Mon Dec 01 2014 - 17:39:58 PST)
Daniel Roe
- Re: [AMBER] pseudo F-statistic (pSF) (Mon Dec 22 2014 - 18:30:55 PST)
- Re: [AMBER] NVE simulation (Sun Dec 21 2014 - 22:04:13 PST)
- Re: [AMBER] MMPBSA-ERROR for firstmolecule-dna (Fri Dec 19 2014 - 11:00:01 PST)
- Re: [AMBER] pseudo F-statistic (pSF) (Fri Dec 19 2014 - 08:52:55 PST)
- Re: [AMBER] help on the AMBER Tutorial B0 (Thu Dec 18 2014 - 08:40:14 PST)
- Re: [AMBER] help in calculation of diffusion coefficient (Thu Dec 18 2014 - 08:01:39 PST)
- Re: [AMBER] installing error Amber 12 Error (Thu Dec 18 2014 - 07:56:43 PST)
- Re: [AMBER] PCA 2dprojection with xtal data and energy information (Tue Dec 16 2014 - 14:53:44 PST)
- Re: [AMBER] clustering problem in ambertool14 (Tue Dec 16 2014 - 12:19:51 PST)
- Re: [AMBER] Analyzing multiple trajectories in cpptraj (Tue Dec 16 2014 - 09:52:46 PST)
- Re: [AMBER] Analyzing multiple trajectories in cpptraj (Mon Dec 15 2014 - 19:21:26 PST)
- Re: [AMBER] Problem with simulation of protein-DNA complex (Mon Dec 15 2014 - 07:22:05 PST)
- Re: [AMBER] Glycan-protein h-bond ptraj (Mon Dec 15 2014 - 00:37:14 PST)
- Re: [AMBER] Error in Box Dimension (Sun Dec 14 2014 - 20:27:17 PST)
- Re: [AMBER] Glycan-protein h-bond ptraj (Sun Dec 14 2014 - 20:23:15 PST)
- Re: [AMBER] production run for diffusion constant (Sun Dec 14 2014 - 08:45:51 PST)
- Re: [AMBER] PCA 2dprojection with xtal data and energy information (Sat Dec 13 2014 - 20:26:54 PST)
- Re: [AMBER] PCA 2dprojection with xtal data and energy information (Sat Dec 13 2014 - 15:48:58 PST)
- Re: [AMBER] conversion of AMBER trajectory to Gromacs trajectory (Sat Dec 13 2014 - 08:27:20 PST)
- Re: [AMBER] Problem with simulation of protein-DNA complex (Fri Dec 12 2014 - 06:50:39 PST)
- Re: [AMBER] Is BUG in cpptraj of version 14?? (Thu Dec 11 2014 - 07:01:25 PST)
- Re: [AMBER] Instructions on How to install Amber on Suse Linux (Mon Dec 08 2014 - 09:56:51 PST)
- Re: [AMBER] closeness (Fri Dec 05 2014 - 10:58:15 PST)
- Re: [AMBER] Alignment before calculation? (Fri Dec 05 2014 - 08:11:39 PST)
- Re: [AMBER] closeness (Fri Dec 05 2014 - 08:07:51 PST)
- Re: [AMBER] MMGBSA.py - issues with molsurf (Fri Dec 05 2014 - 07:58:48 PST)
- Re: [AMBER] closeness (Thu Dec 04 2014 - 21:32:26 PST)
- Re: [AMBER] MMGBSA.py cpptraj - autoimaging issue (Wed Dec 03 2014 - 06:57:56 PST)
- Re: [AMBER] Problems with amber14 intallation in parallel (Mon Dec 01 2014 - 19:54:21 PST)
- Re: [AMBER] LEaP Error (Mon Dec 01 2014 - 15:01:12 PST)
- Re: [AMBER] LEaP Error (Mon Dec 01 2014 - 14:24:43 PST)
- Re: [AMBER] tleap segmentation fault (Mon Dec 01 2014 - 12:32:07 PST)
- Re: [AMBER] tleap segmentation fault (Mon Dec 01 2014 - 12:00:40 PST)
David A Case
- Re: [AMBER] Need help in Targeted MD (Wed Dec 31 2014 - 06:35:08 PST)
- Re: [AMBER] Peter Kollman lectureship, Jan 8 (Tue Dec 30 2014 - 14:29:33 PST)
- Re: [AMBER] Imaging membrane proteins (Mon Dec 29 2014 - 18:29:58 PST)
- Re: [AMBER] rms fit (Mon Dec 29 2014 - 18:22:51 PST)
- Re: [AMBER] convergence problem in antechamber with Ambertools14 (Mon Dec 29 2014 - 18:11:39 PST)
- [AMBER] Peter Kollman lectureship, Jan 8 (Mon Dec 29 2014 - 14:11:49 PST)
- Re: [AMBER] Enthalpy calculation of protein. (Sun Dec 28 2014 - 19:27:04 PST)
- Re: [AMBER] Enthalpy calculation of protein. (Sun Dec 28 2014 - 06:16:05 PST)
- Re: [AMBER] antechamber script (Mon Dec 22 2014 - 14:13:52 PST)
- Re: [AMBER] Missing psi dihedral at cationic N-terminus of protein/peptide? (Mon Dec 22 2014 - 05:36:27 PST)
- Re: [AMBER] Fwd: unclear leap crashing (Mon Dec 22 2014 - 05:30:56 PST)
- Re: [AMBER] Hydrogen charge site and Oxygen V-site displacement (Mon Dec 22 2014 - 05:29:07 PST)
- Re: [AMBER] Improper torsions in NMA (Sat Dec 20 2014 - 06:43:45 PST)
- Re: [AMBER] error in install amber (Fri Dec 19 2014 - 05:10:51 PST)
- Re: [AMBER] Improper torsions in NMA (Fri Dec 19 2014 - 05:07:10 PST)
- Re: [AMBER] unclear leap crashing (Fri Dec 19 2014 - 05:05:43 PST)
- Re: [AMBER] how can i use acpype (Thu Dec 18 2014 - 09:50:27 PST)
- Re: [AMBER] error running equilibration (wall clock called) (Wed Dec 17 2014 - 12:17:43 PST)
- Re: [AMBER] another segfault with sander14 and TI/softcore (Wed Dec 17 2014 - 05:41:32 PST)
- Re: [AMBER] error in parallel installation of Amber 12 with AmberTools13 (Wed Dec 17 2014 - 04:32:24 PST)
- Re: [AMBER] phosphoserine parameters (Tue Dec 16 2014 - 08:27:34 PST)
- Re: [AMBER] Error in Box Dimension (Tue Dec 16 2014 - 05:01:19 PST)
- Re: [AMBER] Optimization under restraint atoms using ibelly option (Mon Dec 15 2014 - 17:33:59 PST)
- Re: [AMBER] error while saving prmtop and inpcrd (Mon Dec 15 2014 - 17:30:04 PST)
- Re: [AMBER] Amber12 parallel installation error (Thu Dec 11 2014 - 04:30:51 PST)
- Re: [AMBER] Information on ff12polA and ff12polL (Thu Dec 11 2014 - 04:22:14 PST)
- Re: [AMBER] TLEAP issues (Tue Dec 09 2014 - 19:03:17 PST)
- Re: [AMBER] Add MgCl2 salts (Tue Dec 09 2014 - 18:58:50 PST)
- Re: [AMBER] AmberTools suppose program (Tue Dec 09 2014 - 18:56:18 PST)
- Re: [AMBER] ERROR USING tleap (Tue Dec 09 2014 - 04:24:01 PST)
- Re: [AMBER] analyze.x error when dealing with the system containing ions in tinker (Mon Dec 08 2014 - 17:30:50 PST)
- Re: [AMBER] help in calculating diffusion coefficient (Mon Dec 08 2014 - 07:00:58 PST)
- Re: [AMBER] Problem with AMBER mail list (Mon Dec 08 2014 - 06:57:03 PST)
- Re: [AMBER] Calculating of charge (Mon Dec 08 2014 - 04:43:18 PST)
- Re: [AMBER] ERROR USING tleap (Mon Dec 08 2014 - 04:39:09 PST)
- Re: [AMBER] Can i combine the result given by sander and pmemd together (Sat Dec 06 2014 - 06:14:30 PST)
- Re: [AMBER] closeness (Sat Dec 06 2014 - 06:05:33 PST)
- Re: [AMBER] error creating mol2 files (Fri Dec 05 2014 - 12:08:36 PST)
- Re: [AMBER] problem with unknown compiler: gnu (Fri Dec 05 2014 - 05:48:52 PST)
- Re: [AMBER] closeness (Fri Dec 05 2014 - 05:41:33 PST)
- Re: [AMBER] TINKER and SANDER minimization (AMOEBA force field) (Thu Dec 04 2014 - 18:55:45 PST)
- Re: [AMBER] Docking with Dock6 (Thu Dec 04 2014 - 10:53:54 PST)
- Re: [AMBER] Help regarding error in top n crd generation (Thu Dec 04 2014 - 04:38:30 PST)
- Re: [AMBER] Problem with triangular point in parameter file (Tue Dec 02 2014 - 05:06:13 PST)
- Re: [AMBER] LEaP Error (Mon Dec 01 2014 - 04:36:23 PST)
- Re: [AMBER] Problem with triangular point in parameter file (Mon Dec 01 2014 - 04:24:52 PST)
de Manzanos Guinot, Angela
- Re: [AMBER] Query about MMPBSA.py (Wed Dec 10 2014 - 02:28:37 PST)
- [AMBER] Query about MMPBSA.py (Tue Dec 09 2014 - 08:49:04 PST)
- [AMBER] MMGBSA.py - issues with molsurf (Fri Dec 05 2014 - 02:29:41 PST)
- Re: [AMBER] MMGBSA.py cpptraj - autoimaging issue (Wed Dec 03 2014 - 03:22:46 PST)
- [AMBER] MMGBSA.py cpptraj - autoimaging issue (Wed Dec 03 2014 - 02:54:09 PST)
Denis Schmidt
- Re: [AMBER] Wrong bond types in Antechamber MOL2 (Tue Dec 09 2014 - 02:08:22 PST)
- [AMBER] Wrong bond types in Antechamber MOL2 (Mon Dec 08 2014 - 07:21:11 PST)
Edward Kalkreuter
- [AMBER] Ambertools14 Installation Appears to Reset (Mon Dec 01 2014 - 18:16:12 PST)
Emilio Lence
- [AMBER] Use of special characters * and ? in ambermask (Sat Dec 06 2014 - 11:31:27 PST)
Fabian
- Re: [AMBER] pmemd.MPI fails to run (Sun Dec 28 2014 - 10:42:25 PST)
Fabian Glaser
- [AMBER] Fwd: pmemd.MPI fails to run (Mon Dec 29 2014 - 05:28:09 PST)
- Re: [AMBER] pmemd.MPI fails to run (Mon Dec 29 2014 - 02:33:18 PST)
- Re: [AMBER] pmemd.MPI fails to run (Sun Dec 28 2014 - 08:31:25 PST)
- [AMBER] pmemd.MPI fails (Sun Dec 21 2014 - 07:39:31 PST)
- [AMBER] pmemd.MPI fails to run (Sun Dec 21 2014 - 06:02:10 PST)
Fabian Gmail
- Re: [AMBER] pmemd.MPI fails to run (Sun Dec 28 2014 - 11:20:03 PST)
fjliu
- Re: [AMBER] TiMergeError (Wed Dec 17 2014 - 03:09:53 PST)
- Re: [AMBER] TiMergeError (Tue Dec 16 2014 - 23:51:54 PST)
- [AMBER] TiMergeError (Tue Dec 16 2014 - 22:18:15 PST)
- Re: [AMBER] change the mode of my AMBER mail list from digest to normal (Fri Dec 12 2014 - 17:51:47 PST)
- [AMBER] change the mode of my AMBER mail list from digest to normal (Fri Dec 12 2014 - 03:56:56 PST)
- [AMBER] switch digest model to normal (Tue Dec 09 2014 - 19:17:07 PST)
Francesco Pietra
- Re: [AMBER] unclear leap crashing (Sat Dec 20 2014 - 11:40:40 PST)
- [AMBER] Fwd: unclear leap crashing (Sat Dec 20 2014 - 08:23:22 PST)
- Re: [AMBER] unclear leap crashing (Fri Dec 19 2014 - 12:55:51 PST)
- [AMBER] unclear leap crashing (Thu Dec 18 2014 - 10:53:21 PST)
- [AMBER] Fwd: leap crashes and set: Improper number of arguments! (Wed Dec 17 2014 - 14:15:49 PST)
- [AMBER] leap crashes and set: Improper number of arguments! (Wed Dec 17 2014 - 13:52:57 PST)
- Re: [AMBER] AmberTools14/Amber10 (Fri Dec 12 2014 - 07:10:44 PST)
- Re: [AMBER] AmberTools14/Amber10 (Fri Dec 12 2014 - 06:59:03 PST)
- [AMBER] AmberTools14/Amber10 (Fri Dec 12 2014 - 03:40:56 PST)
- Re: [AMBER] acetate params for mtkpp (Mon Dec 08 2014 - 08:19:36 PST)
- Re: [AMBER] acetate params for mtkpp (Sun Dec 07 2014 - 13:47:08 PST)
- [AMBER] acetate params for mtkpp (Sun Dec 07 2014 - 09:41:32 PST)
FyD
- Re: [AMBER] unclear leap crashing (Fri Dec 19 2014 - 02:33:31 PST)
- Re: [AMBER] Fwd: RED-III.52-Tools stopped to work suddenly. (Tue Dec 16 2014 - 10:15:07 PST)
- [AMBER] Empirical force fields: release of R.E.D. Server Dev./PyRED Nov. 2014 (Tue Dec 09 2014 - 00:30:32 PST)
- Re: [AMBER] error creating mol2 files (Sat Dec 06 2014 - 05:27:16 PST)
- Re: [AMBER] Linker Attached to DNA (Tue Dec 02 2014 - 23:13:30 PST)
Ganesh Kamath
- Re: [AMBER] Improper torsions in NMA (Fri Dec 19 2014 - 12:08:57 PST)
- [AMBER] Improper torsions in NMA (Thu Dec 18 2014 - 14:13:17 PST)
Gard Nelson
- Re: [AMBER] Analyzing multiple trajectories in cpptraj (Tue Dec 16 2014 - 09:50:11 PST)
- [AMBER] Analyzing multiple trajectories in cpptraj (Mon Dec 15 2014 - 17:37:32 PST)
George M Giambasu
- Re: [AMBER] NVE simulation (Mon Dec 22 2014 - 08:30:37 PST)
George Tzotzos
- [AMBER] B-factor values (Wed Dec 03 2014 - 10:49:28 PST)
- Re: [AMBER] tleap segmentation fault (Mon Dec 01 2014 - 12:17:20 PST)
- Re: [AMBER] tleap segmentation fault (Mon Dec 01 2014 - 12:06:01 PST)
- [AMBER] tleap segmentation fault (Mon Dec 01 2014 - 11:44:32 PST)
Gould, Ian R
- Re: [AMBER] DMPC lipids are slightly charged in lipid14? (Tue Dec 02 2014 - 22:37:43 PST)
Guillaume Roellinger
- [AMBER] steered MD based on PCA (Thu Dec 11 2014 - 00:34:12 PST)
Gustavo Seabra
- Re: [AMBER] Peter Kollman lectureship, Jan 8 (Tue Dec 30 2014 - 06:04:01 PST)
Hai Nguyen
- Re: [AMBER] ERROR USING tleap (Mon Dec 08 2014 - 20:12:06 PST)
Haining Liu
- [AMBER] Add MgCl2 salts (Tue Dec 09 2014 - 13:13:58 PST)
Hallel Freedman
- Re: [AMBER] excluding atom sets from MMPB/GB-SA calculations (Wed Dec 17 2014 - 21:04:36 PST)
- Re: [AMBER] excluding atom sets from MMPB/GB-SA calculations (Wed Dec 17 2014 - 12:33:50 PST)
- Re: [AMBER] excluding atom sets from MMPB/GB-SA calculations (Wed Dec 17 2014 - 11:20:52 PST)
- Re: [AMBER] excluding atom sets from MMPB/GB-SA calculations (Wed Dec 17 2014 - 10:06:40 PST)
- Re: [AMBER] excluding atom sets from MMPB/GB-SA calculations (Tue Dec 16 2014 - 16:50:34 PST)
- [AMBER] excluding atom sets from MMPB/GB-SA calculations (Tue Dec 16 2014 - 16:49:18 PST)
Hannes Loeffler
- Re: [AMBER] another segfault with sander14 and TI/softcore (Wed Dec 17 2014 - 06:46:19 PST)
- Re: [AMBER] TiMergeError (Wed Dec 17 2014 - 03:34:47 PST)
- Re: [AMBER] TiMergeError (Wed Dec 17 2014 - 01:24:20 PST)
- [AMBER] another segfault with sander14 and TI/softcore (Wed Dec 10 2014 - 02:04:48 PST)
- Re: [AMBER] Wrong bond types in Antechamber MOL2 (Tue Dec 09 2014 - 02:43:07 PST)
- Re: [AMBER] Wrong bond types in Antechamber MOL2 (Tue Dec 09 2014 - 01:30:11 PST)
hannes.loeffler.stfc.ac.uk
- Re: [AMBER] TI calculation using pmemd (Mon Dec 29 2014 - 09:22:57 PST)
- Re: [AMBER] antechamber script (Mon Dec 22 2014 - 10:17:59 PST)
- Re: [AMBER] TiMergeError (Wed Dec 17 2014 - 00:27:25 PST)
- Re: [AMBER] TiMergeError (Tue Dec 16 2014 - 23:20:29 PST)
- Re: [AMBER] questions about bcc charge (Mon Dec 08 2014 - 23:53:26 PST)
- Re: [AMBER] Software announcement: Release of PUPIL 3.0 (Mon Dec 08 2014 - 23:42:56 PST)
- Re: [AMBER] Antechamber problem (Mon Dec 08 2014 - 23:28:38 PST)
- Re: [AMBER] error creating mol2 files (Fri Dec 05 2014 - 10:36:29 PST)
Harmeet Kaur
- [AMBER] Parameter could not be saved (Tue Dec 23 2014 - 03:00:25 PST)
Helen Lvy
- [AMBER] Umbrella sampling for molecules moving (Mon Dec 22 2014 - 13:22:38 PST)
Hiromasa WATANABE
- Re: [AMBER] Different convergence in pmemd.cuda against CPU (Sun Dec 21 2014 - 22:18:02 PST)
- Re: [AMBER] Different convergence in pmemd.cuda against CPU (Mon Dec 15 2014 - 22:26:37 PST)
- [AMBER] Different convergence in pmemd.cuda against CPU (Mon Dec 15 2014 - 20:42:18 PST)
Houcemeddine Othman
- [AMBER] installing error Amber 12 Error (Thu Dec 18 2014 - 07:37:54 PST)
Jacopo Sgrignani
- Re: [AMBER] lipid conversion (Sat Dec 27 2014 - 10:07:12 PST)
- [AMBER] lipid conversion (Sat Dec 27 2014 - 08:17:37 PST)
- [AMBER] charmmlipid2amber.py (Fri Dec 26 2014 - 06:21:24 PST)
- [AMBER] phosphoserine parameters (Tue Dec 16 2014 - 07:17:06 PST)
James Starlight
- Re: [AMBER] On the significant dG error in the MMGBSA results.dat (Mon Dec 08 2014 - 23:36:35 PST)
- Re: [AMBER] On the significant dG error in the MMGBSA results.dat (Mon Dec 08 2014 - 00:35:06 PST)
- Re: [AMBER] On the significant dG error in the MMGBSA results.dat (Fri Dec 05 2014 - 03:33:58 PST)
- Re: [AMBER] On the significant dG error in the MMGBSA results.dat (Wed Dec 03 2014 - 00:15:18 PST)
- [AMBER] On the significant dG error in the MMGBSA results.dat (Tue Dec 02 2014 - 13:29:27 PST)
Jason Swails
- Re: [AMBER] WHAM tolerance (Tue Dec 30 2014 - 15:11:08 PST)
- Re: [AMBER] Need help in SMD (Tue Dec 30 2014 - 15:03:53 PST)
- Re: [AMBER] amber14 CUDA GPU for workstation? (Tue Dec 30 2014 - 14:55:33 PST)
- Re: [AMBER] Total energy of system is positive (Mon Dec 29 2014 - 22:05:01 PST)
- Re: [AMBER] Total energy of system is positive (Mon Dec 29 2014 - 15:23:49 PST)
- Re: [AMBER] Total energy of system is positive (Mon Dec 29 2014 - 08:31:53 PST)
- Re: [AMBER] pmemd.MPI fails to run (Mon Dec 29 2014 - 03:53:18 PST)
- Re: [AMBER] conversion of amber outputs to gromacs (Fri Dec 26 2014 - 07:07:25 PST)
- Re: [AMBER] ifqnt (Wed Dec 24 2014 - 08:00:51 PST)
- Re: [AMBER] ifqnt (Wed Dec 24 2014 - 07:59:09 PST)
- Re: [AMBER] ifqnt (Tue Dec 23 2014 - 21:26:18 PST)
- Re: [AMBER] ifqnt (Tue Dec 23 2014 - 19:57:23 PST)
- Re: [AMBER] a problem in MM-GBSA calculation (Tue Dec 23 2014 - 19:53:22 PST)
- Re: [AMBER] Parameter could not be saved (Tue Dec 23 2014 - 06:06:40 PST)
- Re: [AMBER] target dynamics problem (Mon Dec 22 2014 - 09:43:33 PST)
- Re: [AMBER] Singe point QM/MM energy using Gaussian interface (Sun Dec 21 2014 - 11:19:08 PST)
- Re: [AMBER] error in install amber (Sun Dec 21 2014 - 11:14:47 PST)
- Re: [AMBER] pmemd.MPI fails to run (Sun Dec 21 2014 - 07:39:21 PST)
- Re: [AMBER] Error in pmemd.amoeba.MPI run (Sun Dec 21 2014 - 07:35:54 PST)
- Re: [AMBER] MMPBSA-ERROR for firstmolecule-dna (Fri Dec 19 2014 - 10:15:35 PST)
- Re: [AMBER] how can i use acpype (Fri Dec 19 2014 - 06:03:59 PST)
- Re: [AMBER] how can i use acpype (Thu Dec 18 2014 - 11:13:53 PST)
- Re: [AMBER] excluding atom sets from MMPB/GB-SA calculations (Wed Dec 17 2014 - 19:35:48 PST)
- Re: [AMBER] excluding atom sets from MMPB/GB-SA calculations (Wed Dec 17 2014 - 11:30:08 PST)
- Re: [AMBER] excluding atom sets from MMPB/GB-SA calculations (Wed Dec 17 2014 - 11:06:31 PST)
- Re: [AMBER] subscribe amber (Wed Dec 17 2014 - 07:29:00 PST)
- Re: [AMBER] MMPBSA-ERROR for firstmolecule-dna (Tue Dec 16 2014 - 20:44:04 PST)
- Re: [AMBER] gas phase, nonperiodic system with AMOEBA ff in AMBER (Mon Dec 15 2014 - 14:42:06 PST)
- Re: [AMBER] 8Mureabox URE residue unknown (Sat Dec 13 2014 - 07:31:17 PST)
- Re: [AMBER] Generation of 3D structure of polypeptides with modified amino acids (Sat Dec 13 2014 - 07:24:56 PST)
- Re: [AMBER] conversion of AMBER trajectory to Gromacs trajectory (Sat Dec 13 2014 - 07:11:19 PST)
- Re: [AMBER] Problem with simulation of protein-DNA complex (Sat Dec 13 2014 - 07:10:04 PST)
- Re: [AMBER] script to convert the Gromacs topology to Amber topology? (Fri Dec 12 2014 - 05:00:41 PST)
- Re: [AMBER] MM-PBSA (addions) (Fri Dec 12 2014 - 04:45:16 PST)
- Re: [AMBER] AmberTools14/Amber10 (Fri Dec 12 2014 - 04:43:36 PST)
- Re: [AMBER] MMPBSA-ERROR for firstmolecule-dna (Thu Dec 11 2014 - 05:50:10 PST)
- Re: [AMBER] Amber12 parallel installation error (Wed Dec 10 2014 - 07:22:50 PST)
- Re: [AMBER] Failure to restart H-REMD (Wed Dec 10 2014 - 04:11:09 PST)
- Re: [AMBER] Query about MMPBSA.py (Wed Dec 10 2014 - 04:04:28 PST)
- Re: [AMBER] Add MgCl2 salts (Tue Dec 09 2014 - 18:07:33 PST)
- Re: [AMBER] TLEAP issues (Tue Dec 09 2014 - 18:06:38 PST)
- Re: [AMBER] Query about MMPBSA.py (Tue Dec 09 2014 - 09:12:07 PST)
- Re: [AMBER] ERROR USING tleap (Tue Dec 09 2014 - 04:16:16 PST)
- Re: [AMBER] Antechamber problem (Tue Dec 09 2014 - 04:11:38 PST)
- Re: [AMBER] analyze.x error when dealing with the system containing ions in tinker (Mon Dec 08 2014 - 10:00:51 PST)
- Re: [AMBER] Problem with AMBER mail list (Mon Dec 08 2014 - 07:56:31 PST)
- Re: [AMBER] MMPBSA.py bad atom type (Mon Dec 08 2014 - 07:10:22 PST)
- Re: [AMBER] Problems with amber14 intallation in parallel (Mon Dec 08 2014 - 06:47:26 PST)
- Re: [AMBER] acetate params for mtkpp (Sun Dec 07 2014 - 19:18:27 PST)
- Re: [AMBER] Problems with amber14 intallation in parallel (Sun Dec 07 2014 - 19:17:34 PST)
- Re: [AMBER] problem with unknown compiler: gnu (Fri Dec 05 2014 - 08:22:32 PST)
- Re: [AMBER] On the significant dG error in the MMGBSA results.dat (Fri Dec 05 2014 - 05:59:56 PST)
- Re: [AMBER] How to calculate energy change between two conformations (Thu Dec 04 2014 - 13:33:38 PST)
- Re: [AMBER] Monitoring GPU voltage (Thu Dec 04 2014 - 13:14:59 PST)
- Re: [AMBER] How to calculate energy change between two conformations (Thu Dec 04 2014 - 12:20:03 PST)
- Re: [AMBER] B-factor values (Wed Dec 03 2014 - 11:18:35 PST)
- Re: [AMBER] MMGBSA.py cpptraj - autoimaging issue (Wed Dec 03 2014 - 04:19:58 PST)
- Re: [AMBER] Ambertools14 Installation Appears to Reset (Mon Dec 01 2014 - 18:37:15 PST)
- Re: [AMBER] tleap segmentation fault (Mon Dec 01 2014 - 12:15:45 PST)
Jin Zhang
- Re: [AMBER] Instructions on How to install Amber on Suse Linux (Mon Dec 08 2014 - 07:55:55 PST)
Jinfeng Huang
- Re: [AMBER] a problem in MM-GBSA calculation (Tue Dec 23 2014 - 18:33:24 PST)
Jiri Sponer
- Re: [AMBER] amber force field (Tue Dec 30 2014 - 02:12:52 PST)
Joan Torras
- [AMBER] Software announcement: Release of PUPIL 3.0 (Mon Dec 08 2014 - 15:36:14 PST)
Jonathan Gough
- Re: [AMBER] lipid conversion (Sat Dec 27 2014 - 16:57:07 PST)
- Re: [AMBER] pseudo F-statistic (pSF) (Mon Dec 22 2014 - 18:59:12 PST)
- Re: [AMBER] pseudo F-statistic (pSF) (Mon Dec 22 2014 - 16:36:09 PST)
- [AMBER] pseudo F-statistic (pSF) (Thu Dec 18 2014 - 14:54:39 PST)
Jorgen Simonsen
- Re: [AMBER] Problem with triangular point in parameter file (Mon Dec 01 2014 - 15:20:59 PST)
Kanin Wichapong
- [AMBER] Amber12 parallel installation error (Wed Dec 10 2014 - 06:43:05 PST)
Ken Merz
- Re: [AMBER] how to retain the MG++ coordination geometry during simulation (Tue Dec 02 2014 - 12:31:55 PST)
Kenneth Lam
- Re: [AMBER] Monitoring GPU voltage (Fri Dec 05 2014 - 13:08:16 PST)
- Re: [AMBER] Monitoring GPU voltage (Thu Dec 04 2014 - 15:00:52 PST)
- Re: [AMBER] Monitoring GPU voltage (Thu Dec 04 2014 - 13:24:17 PST)
- Re: [AMBER] Monitoring GPU voltage (Thu Dec 04 2014 - 13:02:41 PST)
- [AMBER] Monitoring GPU voltage (Thu Dec 04 2014 - 12:08:32 PST)
Kshatresh Dutta Dubey
- Re: [AMBER] Need help in SMD (Wed Dec 31 2014 - 04:20:37 PST)
- [AMBER] Need help in SMD (Tue Dec 30 2014 - 09:32:34 PST)
- Re: [AMBER] conversion of amber outputs to gromacs (Fri Dec 26 2014 - 04:17:25 PST)
- Re: [AMBER] ifqnt (Wed Dec 24 2014 - 03:06:45 PST)
- Re: [AMBER] Parameter could not be saved (Tue Dec 23 2014 - 06:39:30 PST)
- Re: [AMBER] How to calculate energy change between two conformations (Thu Dec 04 2014 - 13:43:58 PST)
- Re: [AMBER] How to calculate energy change between two conformations (Thu Dec 04 2014 - 13:18:16 PST)
- [AMBER] How to calculate energy change between two conformations (Thu Dec 04 2014 - 07:28:57 PST)
kurisaki
- Re: [AMBER] "Unit 18 Error on OPEN: logfile" (Sat Dec 13 2014 - 17:20:34 PST)
- Re: [AMBER] "Unit 18 Error on OPEN: logfile" (Sat Dec 13 2014 - 17:04:24 PST)
- [AMBER] "Unit 18 Error on OPEN: logfile" (Sat Dec 13 2014 - 16:57:28 PST)
Lawrenz, Morgan
- Re: [AMBER] gas phase, nonperiodic system with AMOEBA ff in AMBER (Mon Dec 15 2014 - 14:52:13 PST)
- [AMBER] gas phase, nonperiodic system with AMOEBA ff in AMBER (Mon Dec 15 2014 - 12:17:51 PST)
Mahendra B Thapa
- [AMBER] clustering problem in ambertool14 (Tue Dec 16 2014 - 10:28:13 PST)
Manikanthan Bhavaraju
- [AMBER] Information on ff12polA and ff12polL (Wed Dec 10 2014 - 10:55:18 PST)
Marc van der Kamp
- Re: [AMBER] antechamber script (Mon Dec 22 2014 - 08:45:50 PST)
- Re: [AMBER] Software announcement: Release of PUPIL 3.0 (Tue Dec 09 2014 - 00:52:04 PST)
- Re: [AMBER] how to retain the MG++ coordination geometry during simulation (Tue Dec 02 2014 - 12:33:51 PST)
- [AMBER] bug in "natural language" system to define nmropt restraints: generalized distance coordinate (Tue Dec 02 2014 - 01:29:50 PST)
Marcos Serrou do Amaral
- Re: [AMBER] PM6-DH+ simulation problem (Fri Dec 12 2014 - 06:16:27 PST)
- [AMBER] PM6-DH+ simulation problem (Wed Dec 10 2014 - 09:05:57 PST)
Marcus Arieno
- Re: [AMBER] MMGBSA.py - issues with molsurf (Fri Dec 05 2014 - 08:50:31 PST)
Mary Varughese
- Re: [AMBER] hydophobicity (Sun Nov 30 2014 - 17:38:19 PST)
maryam azimzadehirani
- Re: [AMBER] Glycan-protein h-bond ptraj (Sun Dec 14 2014 - 23:05:57 PST)
- [AMBER] Glycan-protein h-bond ptraj (Sun Dec 14 2014 - 19:40:05 PST)
Matthew Harrigan
- [AMBER] DMPC lipids are slightly charged in lipid14? (Tue Dec 02 2014 - 22:00:41 PST)
Michael Shokhen
- Re: [AMBER] amber14 CUDA GPU for workstation? (Tue Dec 30 2014 - 13:49:24 PST)
- Re: [AMBER] amber14 CUDA GPU for workstation? (Tue Dec 30 2014 - 12:51:48 PST)
- [AMBER] amber14 CUDA GPU for workstation? (Tue Dec 30 2014 - 11:31:33 PST)
Mickey Richards
- [AMBER] xleap segmentation fault when removing residues (Thu Dec 04 2014 - 15:03:42 PST)
mmaestre.gate.sinica.edu.tw
- [AMBER] Laccase studies of 2013 (Sun Dec 21 2014 - 22:24:12 PST)
MOHD HOMAIDUR RAHMAN
- Re: [AMBER] Total energy of system is positive (Mon Dec 29 2014 - 21:46:26 PST)
- Re: [AMBER] Total energy of system is positive (Mon Dec 29 2014 - 11:51:53 PST)
- [AMBER] Total energy of system is positive (Sun Dec 28 2014 - 21:40:26 PST)
- [AMBER] Calculating of charge (Mon Dec 08 2014 - 03:57:47 PST)
Nadine Homeyer
- Re: [AMBER] TI and FEW (Mon Dec 01 2014 - 23:34:40 PST)
Narendar Kolimi
- Re: [AMBER] problem with unknown compiler: gnu (Fri Dec 05 2014 - 08:29:50 PST)
- Re: [AMBER] problem with unknown compiler: gnu (Fri Dec 05 2014 - 08:20:56 PST)
- Re: [AMBER] problem with unknown compiler: gnu (Fri Dec 05 2014 - 04:20:40 PST)
nealec
- [AMBER] Missing psi dihedral at cationic N-terminus of protein/peptide? (Mon Dec 15 2014 - 13:32:42 PST)
Nhai
- Re: [AMBER] antechamber script (Mon Dec 22 2014 - 13:19:33 PST)
Nihal Korkmaz
- Re: [AMBER] Forcefield for DNA (Wed Dec 24 2014 - 19:44:59 PST)
Novosielski, Ryan
- [AMBER] Amber 14 Performance and Other Questions (Fri Dec 26 2014 - 13:16:05 PST)
Pallavi Mohanty
- [AMBER] Need help in Targeted MD (Wed Dec 31 2014 - 03:57:14 PST)
Parker de Waal
- [AMBER] Imaging membrane proteins (Mon Dec 29 2014 - 16:37:26 PST)
pavel.banas.upol.cz
- Re: [AMBER] amber force field (Mon Dec 29 2014 - 08:32:13 PST)
Ravi Tripathi
- [AMBER] script to convert the Gromacs topology to Amber topology? (Fri Dec 12 2014 - 01:19:47 PST)
Ray Luo, Ph.D.
- Re: [AMBER] MMPBSA-ERROR for firstmolecule-dna (Fri Dec 19 2014 - 15:48:03 PST)
- Re: [AMBER] MMPBSA-ERROR for firstmolecule-dna (Fri Dec 19 2014 - 10:25:23 PST)
- Re: [AMBER] MMPBSA-ERROR for firstmolecule-dna (Fri Dec 19 2014 - 09:47:39 PST)
- Re: [AMBER] excluding atom sets from MMPB/GB-SA calculations (Wed Dec 17 2014 - 09:58:28 PST)
- Re: [AMBER] MMPBSA-ERROR for firstmolecule-dna (Wed Dec 17 2014 - 09:53:58 PST)
- Re: [AMBER] selecting the best docking pose with MM/PBSA (Tue Dec 09 2014 - 15:55:14 PST)
- Re: [AMBER] selecting the best docking pose with MM/PBSA (Tue Dec 09 2014 - 10:54:53 PST)
Rebeca García Fandiño
- Re: [AMBER] convergence problem in antechamber with Ambertools14 (Tue Dec 30 2014 - 00:58:22 PST)
- [AMBER] convergence problem in antechamber with Ambertools14 (Mon Dec 29 2014 - 05:05:12 PST)
Robin Jain
- [AMBER] NVE simulation (Sun Dec 21 2014 - 21:48:07 PST)
- [AMBER] help in calculation of diffusion coefficient (Thu Dec 18 2014 - 07:28:33 PST)
- [AMBER] error in parallel installation of Amber 12 with AmberTools13 (Wed Dec 17 2014 - 01:47:07 PST)
- [AMBER] production run for diffusion constant (Sun Dec 14 2014 - 07:39:17 PST)
- [AMBER] conversion of AMBER trajectory to Gromacs trajectory (Fri Dec 12 2014 - 23:14:24 PST)
- [AMBER] help in calculating diffusion coefficient (Mon Dec 08 2014 - 06:40:52 PST)
Romero, Raquel
- [AMBER] Lipid 14 PDB format (Mon Dec 08 2014 - 10:56:58 PST)
ROOPALI VERMA
- Re: [AMBER] ERROR USING tleap (Tue Dec 09 2014 - 00:25:07 PST)
- [AMBER] ERROR USING tleap (Mon Dec 08 2014 - 03:08:15 PST)
Ross Walker
- Re: [AMBER] amber14 CUDA GPU for workstation? (Tue Dec 30 2014 - 14:03:19 PST)
- Re: [AMBER] amber14 CUDA GPU for workstation? (Tue Dec 30 2014 - 12:11:42 PST)
- Re: [AMBER] Fwd: pmemd.MPI fails to run (Mon Dec 29 2014 - 08:05:21 PST)
- Re: [AMBER] pmemd.MPI fails to run (Sun Dec 28 2014 - 09:35:59 PST)
- Re: [AMBER] Amber 14 Performance and Other Questions (Fri Dec 26 2014 - 14:13:25 PST)
- Re: [AMBER] Different convergence in pmemd.cuda against CPU (Tue Dec 16 2014 - 10:19:02 PST)
- Re: [AMBER] Amber 12 on K20 GPUs -- how am I doing? (Tue Dec 16 2014 - 10:15:36 PST)
- Re: [AMBER] Different convergence in pmemd.cuda against CPU (Mon Dec 15 2014 - 21:43:42 PST)
- Re: [AMBER] change the mode of my AMBER mail list from digest to normal (Fri Dec 12 2014 - 08:39:22 PST)
- Re: [AMBER] Monitoring GPU voltage (Thu Dec 04 2014 - 19:06:31 PST)
- Re: [AMBER] Monitoring GPU voltage (Thu Dec 04 2014 - 14:16:32 PST)
- Re: [AMBER] installing amber12 in GPU (Mon Dec 01 2014 - 06:31:54 PST)
Ruchika Bhat
- Re: [AMBER] Help regarding error in top n crd generation (Thu Dec 04 2014 - 04:32:17 PST)
- [AMBER] Help regarding error in top n crd generation (Wed Dec 03 2014 - 23:14:29 PST)
Ryan Novosielski
- Re: [AMBER] pmemd.MPI fails to run (Sun Dec 28 2014 - 09:06:48 PST)
Sarah Witzke
- Re: [AMBER] lipid conversion (Sat Dec 27 2014 - 10:00:01 PST)
- Re: [AMBER] conversion of amber outputs to gromacs (Fri Dec 26 2014 - 16:24:27 PST)
shahab shariati
- [AMBER] conversion of amber outputs to gromacs (Fri Dec 26 2014 - 05:16:41 PST)
- [AMBER] conversion of amber outputs to gromacs (Thu Dec 25 2014 - 23:55:43 PST)
- [AMBER] conversion of amber outputs to gromacs (Thu Dec 25 2014 - 23:48:35 PST)
Soumendranath Bhakat
- Re: [AMBER] Parameter could not be saved (Tue Dec 23 2014 - 03:11:04 PST)
- [AMBER] Alignment before calculation? (Fri Dec 05 2014 - 07:12:38 PST)
Suman Chakrabarty
- [AMBER] Generation of 3D structure of polypeptides with modified amino acids (Sat Dec 13 2014 - 02:01:47 PST)
Sun
- [AMBER] WHAM tolerance (Thu Dec 25 2014 - 19:46:20 PST)
Sylvester Tumusiime
- Re: [AMBER] rms fit (Tue Dec 30 2014 - 12:33:44 PST)
- [AMBER] rms fit (Mon Dec 29 2014 - 12:47:16 PST)
- Re: [AMBER] Hydrogen charge site and Oxygen V-site displacement (Mon Dec 22 2014 - 19:12:19 PST)
- [AMBER] Hydrogen charge site and Oxygen V-site displacement (Sun Dec 21 2014 - 04:29:18 PST)
- Re: [AMBER] closeness (Fri Dec 05 2014 - 18:32:55 PST)
- Re: [AMBER] closeness (Fri Dec 05 2014 - 10:44:38 PST)
- Re: [AMBER] closeness (Fri Dec 05 2014 - 10:05:37 PST)
- Re: [AMBER] closeness (Fri Dec 05 2014 - 03:49:35 PST)
- [AMBER] closeness (Thu Dec 04 2014 - 21:12:36 PST)
Teerapong Pirojsirikul
- [AMBER] Solvation free energy using soft core potential (Wed Dec 31 2014 - 17:08:02 PST)
Thomas Cheatham
- Re: [AMBER] pmemd.MPI fails to run (Sun Dec 28 2014 - 11:07:56 PST)
Thomas Evangelidis
- Re: [AMBER] selecting the best docking pose with MM/PBSA (Tue Dec 09 2014 - 13:32:15 PST)
- [AMBER] selecting the best docking pose with MM/PBSA (Mon Dec 08 2014 - 15:22:39 PST)
Torras, Joan
- Re: [AMBER] Software announcement: Release of PUPIL 3.0 (Tue Dec 09 2014 - 01:17:12 PST)
- Re: [AMBER] Software announcement: Release of PUPIL 3.0 (Tue Dec 09 2014 - 00:50:15 PST)
Tru Huynh
- Re: [AMBER] Monitoring GPU voltage (Tue Dec 09 2014 - 15:46:43 PST)
- Re: [AMBER] Monitoring GPU voltage (Thu Dec 04 2014 - 12:30:26 PST)
Urszula Uciechowska
- [AMBER] single strand DNA (Mon Dec 08 2014 - 05:45:34 PST)
Vijay Achari
- Re: [AMBER] installing amber12 in GPU (Sun Nov 30 2014 - 23:30:21 PST)
Vlad Cojocaru
- [AMBER] Free Energy Workshop, Münster, March 9-11, 2015 (Fri Dec 19 2014 - 04:58:42 PST)
- Re: [AMBER] accelerated MD set up (Tue Dec 02 2014 - 04:32:16 PST)
Wang Moye
- [AMBER] How to analyze REMD results (Sun Dec 21 2014 - 16:13:15 PST)
- [AMBER] How to analyze REMD results (Mon Dec 15 2014 - 22:42:04 PST)
wangmt
- [AMBER] TI calculation using pmemd (Mon Dec 29 2014 - 06:21:51 PST)
- [AMBER] Problem with AMBER mail list (Mon Dec 08 2014 - 06:26:47 PST)
- [AMBER] Can i combine the result given by sander and pmemd together (Sat Dec 06 2014 - 01:21:54 PST)
wjli
- [AMBER] Error during Adding Fragment（about MCPB ） (Sat Dec 27 2014 - 20:26:35 PST)
- [AMBER] 回复： Errors during Adding hydrogen atoms to the PDB file（MCPB program） (Tue Dec 23 2014 - 21:01:27 PST)
- [AMBER] Errors during Adding hydrogen atoms to the PDB file（MCPB program） (Tue Dec 23 2014 - 20:42:50 PST)
wliu
- Re: [AMBER] subscribe amber (Tue Dec 16 2014 - 23:53:07 PST)
wmsmith
- [AMBER] Generate pmf of small molecule membrane insertion (Thu Dec 11 2014 - 14:34:02 PST)
Wong, Sook (NIH/NCATS) [V]
- [AMBER] TLEAP issues (Tue Dec 09 2014 - 13:59:01 PST)
- Re: [AMBER] Docking with Dock6 (Thu Dec 04 2014 - 12:00:12 PST)
- [AMBER] Docking with Dock6 (Thu Dec 04 2014 - 09:28:28 PST)
Ya Gao
- [AMBER] Error in pmemd.amoeba.MPI run (Sun Dec 21 2014 - 05:17:01 PST)
- Re: [AMBER] analyze.x error when dealing with the system containing ions in tinker (Mon Dec 08 2014 - 21:41:19 PST)
- Re: [AMBER] analyze.x error when dealing with the system containing ions in tinker (Mon Dec 08 2014 - 21:40:12 PST)
- [AMBER] analyze.x error when dealing with the system containing ions in tinker (Mon Dec 08 2014 - 08:47:05 PST)
yaser
- Re: [AMBER] how can i use acpype (Thu Dec 18 2014 - 08:55:18 PST)
Yaser Hosseini
- Re: [AMBER] error in install amber (Sun Dec 21 2014 - 08:36:49 PST)
- [AMBER] error in acpype (Sun Dec 21 2014 - 08:34:13 PST)
- [AMBER] error in install amber (Fri Dec 19 2014 - 02:05:24 PST)
- Re: [AMBER] how can i use acpype (Fri Dec 19 2014 - 00:04:11 PST)
- Re: [AMBER] how can i use acpype (Thu Dec 18 2014 - 10:39:06 PST)
YC Sun
- Re: [AMBER] Can i combine the result given by sander and pmemd together (Sat Dec 06 2014 - 02:22:23 PST)
Yu Chen
- Re: [AMBER] AmberTools suppose program (Tue Dec 09 2014 - 19:30:44 PST)
- [AMBER] AmberTools suppose program (Tue Dec 09 2014 - 12:27:28 PST)
Zeinab Emami
- Re: [AMBER] Fwd: RED-III.52-Tools stopped to work suddenly. (Wed Dec 17 2014 - 02:45:59 PST)
- [AMBER] Fwd: RED-III.52-Tools stopped to work suddenly. (Tue Dec 16 2014 - 03:05:19 PST)
Zhang, Sixue
- [AMBER] Looking for AMBER FF12SB for CHARMM (Sun Dec 14 2014 - 14:52:03 PST)
徐晓庶
- [AMBER] questions about bcc charge (Mon Dec 08 2014 - 22:07:11 PST)
朱亚莉
- [AMBER] a problem in MM-GBSA calculation (Tue Dec 23 2014 - 05:22:11 PST)
杨川
- Re: [AMBER] Error in Box Dimension (Mon Dec 15 2014 - 21:15:43 PST)
- [AMBER] Error in Box Dimension (Sun Dec 14 2014 - 20:13:13 PST)
汪盛
- [AMBER] sander.PUPIL compile error (Mon Dec 08 2014 - 19:12:49 PST)
王珍
- [AMBER] amber force field (Sun Dec 28 2014 - 03:51:25 PST)
양지현
- [AMBER] TINKER and SANDER minimization (AMOEBA force field) (Thu Dec 04 2014 - 18:17:11 PST)

Amber Archive Dec 2014 by author