Not easy to spot the error in this data pile. Better attach each file separately and only paste the principal inputs to leap and the error message to the body of the mail.
I think what you want to do is more like
source leaprc.gaff
SAL = loadmol2 sal1_h.mol2
mods = loadamberparams sal1_h.frcmod
saveoff {SAL mods} sal1_h.lib
and then
source leaprc.gaff
loadoff sal1_h.lib
comp1 = loadpdb comp1.pdb
Your use of saveoff shouldn't even work. Use the list and desc commands to see what actual names you are using and storing.
Cheers,
Hannes.
--
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Received on Mon Dec 08 2014 - 23:30:03 PST
