Re: [AMBER] error in parallel installation of Amber 12 with AmberTools13

From: <aksbmbg_s.caluniv.ac.in>
Date: Wed, 17 Dec 2014 04:53:33 -0600

> Dear all,
> i want to install Amber12 with Ambertools13 on parallel machine. for this
> i
> firstly installed serial version and finally when i start to installed
> parallel, i give the follwoing command
> *./configure -mpi gnu*
> and i got configure complete and now i give the command *make install* and
> i got the following error
>
> cd AmberTools/src && make install
> make[1]: Entering directory
> `/home/vipin/CompiledSoft/Amber/amber12/AmberTools/src'
> Starting installation of AmberTools13 MPI at Wed Dec 17 15:19:08 IST 2014.
> (cd etc && make parallel)
> make[2]: Entering directory
> `/home/vipin/CompiledSoft/Amber/amber12/AmberTools/src/etc'
> mpif90 -DMKL -DBINTRAJ -DMPI -o numprocs numprocs.F90
> mpif90: error while loading shared libraries: libimf.so: cannot open
> shared
> object file: No such file or directory
> make[2]: *** [parallel] Error 127
> make[2]: Leaving directory
> `/home/vipin/CompiledSoft/Amber/amber12/AmberTools/src/etc'
> make[1]: *** [parallel] Error 2
> make[1]: Leaving directory
> `/home/vipin/CompiledSoft/Amber/amber12/AmberTools/src'
> make: *** [install] Error 2
>
> Can anyone help me in this installation.
> Thanking You in advance.
> --
> Robin Jain
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>


Assuming that you have applications for parallel processing (openmpi,
mpich or mpich2) the most probable reason could be: it unable to find
shared lib.


add this "export LD_LIBRARY_PATH=$AMBERHOME/lib\:$LD_LIBRARY_PATH" in your
bashrc or have a look at
"http://jswails.wikidot.com/installing-amber12-and-ambertools-13"



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Received on Wed Dec 17 2014 - 03:00:03 PST
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