> On Dec 19, 2014, at 12:47 PM, Ray Luo, Ph.D. <ray.luo.uci.edu> wrote:
>
> Abhi,
>
> Just to reply on the list for the sake of tracking …
>
> Something wrong with the prmtop files that were generated … I couldn't
> load any one (ligand/receptor/complex/solvated complex) into VMD …
>
> How did you get these files converted from? Some other developers may
> chime in on this …
These are chamber-generated prmtop files. They are not compatible with VMD. You should be able to load them into cpptraj, though. You can use cpptraj to generate a PDB file you can visualize in VMD if you need to.
All the best,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Fri Dec 19 2014 - 10:30:03 PST
