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-- Ray Luo, Ph.D. Professor, Biochemistry, Molecular Biophysics, Chemical Physics, Chemical and Biomedical Engineering University of California, Irvine, CA 92697-3900 On Fri, Dec 19, 2014 at 10:15 AM, Jason Swails <jason.swails.gmail.com> wrote: > >> On Dec 19, 2014, at 12:47 PM, Ray Luo, Ph.D. <ray.luo.uci.edu> wrote: >> >> Abhi, >> >> Just to reply on the list for the sake of tracking … >> >> Something wrong with the prmtop files that were generated … I couldn't >> load any one (ligand/receptor/complex/solvated complex) into VMD … >> >> How did you get these files converted from? Some other developers may >> chime in on this … > > These are chamber-generated prmtop files. They are not compatible with VMD. You should be able to load them into cpptraj, though. You can use cpptraj to generate a PDB file you can visualize in VMD if you need to. > > All the best, > Jason > > -- > Jason M. Swails > BioMaPS, > Rutgers University > Postdoctoral Researcher > > _______________________________________________ > AMBER mailing list > AMBER.ambermd.org > http://lists.ambermd.org/mailman/listinfo/amber _______________________________________________ AMBER mailing list AMBER.ambermd.org http://lists.ambermd.org/mailman/listinfo/amberReceived on Fri Dec 19 2014 - 10:30:03 PST