Re: [AMBER] lipid conversion

From: Jacopo Sgrignani <sgrigna.gmail.com>
Date: Sat, 27 Dec 2014 19:07:12 +0100

Dear Sarah
Thanks for your reply, I know I sent the same email yesterday but after one
day I was
unable to see my email into the list. So I thought It wasn't properly sent.

Moreover, I'm conscious this is holiday time.

I really apology for my emails.

regards

Jacopo



2014-12-27 19:00 GMT+01:00 Sarah Witzke <witzke.sdu.dk>:

> Dear Jacopo,
>
> You asked the same question yesterday, and as you have no answer yet, you
> may have to be a bit more patient since this is holiday times.
> If you like, you can send me your .pdb file and I can have a look at it
> and try to convert it, but since I am not a developer I cannot promise you
> to find the problem.
> Another suggestion is to look at the python code yourself, search for the
> error message and work your way back from there to find out the problem
> that causes that specific error.
> Also, make sure that you use the most recent version of the program.
>
> Best regards,
> Sarah
>
> Den 27/12/2014 kl. 17.17 skrev Jacopo Sgrignani <sgrigna.gmail.com>:
>
> > Dear all
> > I'm trying to convert a membrane created with the CHARMM-GUI for
> running a
> > simulation with Amber, using the charmmlipid2amber.py script.
> > I tried different compositions anyway I always get this error:
> >
> > Error: Number of atoms in residue does not match number of atoms in
> residue
> > in replacement data file
> >
> >
> > Could anybody help me to understand the problem?
> >
> >
> > Thanks in advance
> >
> >
> > Jacopo
> > _______________________________________________
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> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
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Received on Sat Dec 27 2014 - 10:30:03 PST
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