Hi Shahab,
Why do you want to change the mdcrd files in xtc only for analysis. I
think, cpptraj/ptraj is more than sufficient for all type of analysis which
may be done by gromacs. However, you can try vmd to change the mdcrd to
gromacs trr files at your own risk.
1. Load amber prmtop and mdcrd files in vmd.
2. File--> save coordinates--> file type--->trr.
best
kshatresh
On Fri, Dec 26, 2014 at 9:55 AM, shahab shariati <shahab.shariati.gmail.com>
wrote:
> I used AMBER 10 for doing MD simulation.
>
> I used amber03 force field for protein and antechamber for ligand.
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Received on Fri Dec 26 2014 - 04:30:02 PST
