[AMBER] Alignment before calculation?

From: Soumendranath Bhakat <bhakatsoumendranath.gmail.com>
Date: Fri, 5 Dec 2014 17:12:38 +0200

Dear Amberists;

Just a small query. Do we need to use the rms command to align the
structure to
the average structure before we calculate solvent accessible surface area
and radius of gyration?


Your help will be highly appreciated.

Best;
SB 

-- 
Thanks & Regards;
Soumendranath Bhakat
Researcher
Molecular Modelling and Drug Design Research Group
Discipline of Pharmaceutical Sciences
UKZN, Westville
Weblink: http://soliman.ukzn.ac.za/Home.aspx
Past: Department of Pharmaceutical Sciences
Birla Institute of Technology, Mesra, India
in.linkedin.com/pub/soumendranath-bhakat/15/79b/b9/
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Received on Fri Dec 05 2014 - 07:30:02 PST
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