Hi,
On Fri, Dec 5, 2014 at 8:12 AM, Soumendranath Bhakat
<bhakatsoumendranath.gmail.com> wrote:
> Just a small query. Do we need to use the rms command to align the
> structure to
> the average structure before we calculate solvent accessible surface area
> and radius of gyration?
No. Those are internal measurements and do not depend on global alignment.
-Dan
>
>
> Your help will be highly appreciated.
>
> Best;
> SB
>
> --
> Thanks & Regards;
> Soumendranath Bhakat
> Researcher
> Molecular Modelling and Drug Design Research Group
> Discipline of Pharmaceutical Sciences
> UKZN, Westville
> Weblink: http://soliman.ukzn.ac.za/Home.aspx
> Past: Department of Pharmaceutical Sciences
> Birla Institute of Technology, Mesra, India
> in.linkedin.com/pub/soumendranath-bhakat/15/79b/b9/
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--
-------------------------
Daniel R. Roe, PhD
Department of Medicinal Chemistry
University of Utah
30 South 2000 East, Room 307
Salt Lake City, UT 84112-5820
http://home.chpc.utah.edu/~cheatham/
(801) 587-9652
(801) 585-6208 (Fax)
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Received on Fri Dec 05 2014 - 08:30:02 PST
