Dear Dr. Jason Swails,
It is working fine. Thank you so much for
your early reply.
On Fri, Dec 5, 2014 at 9:52 PM, Jason Swails <jason.swails.gmail.com> wrote:
> On Fri, Dec 5, 2014 at 11:20 AM, Narendar Kolimi <bo13p0001.iith.ac.in>
> wrote:
>
> > Dear Dr. David A Case,
> > Thank you so much for your earlier
> reply.
> > Here is the procedure that how I followed for the installation of amber12
> > [Here I used AmberTools12].
> > I downloaded AmberTools13 (as you mentioned), then un-tarred the file in
> > the following directory.
> > " /Users/narendar/programs/ "
> > Then, un-tarred the Amber12.tar.bz2 followed by cd to that directory.
> >
> > next I set environment variable by typing the following command
> > " export AMBERHOME=/Users/narendar/programs/amber12/ "
> > After that I typed " ./configure gnu "
> > in " /Users/narendar/programs/amber12/AmberTools/src " directory. Then
> it
> > shows the following error.
> >
> > *"" Starting with Amber12 (and AmberTools12), you should no longer run*
> > *configure from this directory. Go up two directories (to $AMBERHOME)*
> > *and run configure there. "" *
> >
> > Followed by I typed './configure gnu -noX11' in
> > "/Users/narendar/programs/amber12/ " directory. But it shows the
> following
> > error again.
> >
> > *"" Checking for updates...*
> > *Checking for available patches online. This may take a few seconds...*
> >
> > *Available AmberTools 13 patches:*
> >
> > *No patches available*
> >
> > *Available Amber 12 patches:*
> >
> > *No patches available*
> > *Error: unknown compiler: gnu*
> > * Type './configure -help' for options.*
> > *Configure failed due to the errors above! ""*
> >
> > [Here AmberTools13 patches are already updated]
> >
> > If you could help me, I will be very grateful to you.
> >
>
> The compiler has to come last. That's a weird error message you received
> though. Try this:
>
> ./configure -noX11 gnu
>
> HTH,
> Jason
>
> --
> Jason M. Swails
> BioMaPS,
> Rutgers University
> Postdoctoral Researcher
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
With best regards,
Narendar Kolimi
C/O Dr. Thenmalarchelvi Rathinavelan
PhD scholar,
Molecular Biophysics Lab,
Dept.of Biotechnology,
Indian Institute of Technology Hyderabad,
Ordinance Factory, Medak-502205.
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Dec 05 2014 - 08:30:04 PST
