On Fri, Dec 5, 2014 at 11:20 AM, Narendar Kolimi <bo13p0001.iith.ac.in>
wrote:
> Dear Dr. David A Case,
> Thank you so much for your earlier reply.
> Here is the procedure that how I followed for the installation of amber12
> [Here I used AmberTools12].
> I downloaded AmberTools13 (as you mentioned), then un-tarred the file in
> the following directory.
> " /Users/narendar/programs/ "
> Then, un-tarred the Amber12.tar.bz2 followed by cd to that directory.
>
> next I set environment variable by typing the following command
> " export AMBERHOME=/Users/narendar/programs/amber12/ "
> After that I typed " ./configure gnu "
> in " /Users/narendar/programs/amber12/AmberTools/src " directory. Then it
> shows the following error.
>
> *"" Starting with Amber12 (and AmberTools12), you should no longer run*
> *configure from this directory. Go up two directories (to $AMBERHOME)*
> *and run configure there. "" *
>
> Followed by I typed './configure gnu -noX11' in
> "/Users/narendar/programs/amber12/ " directory. But it shows the following
> error again.
>
> *"" Checking for updates...*
> *Checking for available patches online. This may take a few seconds...*
>
> *Available AmberTools 13 patches:*
>
> *No patches available*
>
> *Available Amber 12 patches:*
>
> *No patches available*
> *Error: unknown compiler: gnu*
> * Type './configure -help' for options.*
> *Configure failed due to the errors above! ""*
>
> [Here AmberTools13 patches are already updated]
>
> If you could help me, I will be very grateful to you.
>
The compiler has to come last. That's a weird error message you received
though. Try this:
./configure -noX11 gnu
HTH,
Jason
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Fri Dec 05 2014 - 08:30:03 PST
