This error message is new to me and I don't understand why you got it. One
of the PBSA developers will have to chime in here.
On Tue, Dec 16, 2014 at 10:56 PM, Abhishek TYAGI <atyagiaa.connect.ust.hk>
wrote:
>
> Hello experts,
>
> I am still waiting for the reply for my problem, if some one have any clue
> please tell me, I am stuck to this error. I am new to AMBER I am
> understanding how to solve the error.
>
> Thanks in advance
>
> Abhi
>
> ________________________________________
> From: Abhishek TYAGI
> Sent: Monday, December 15, 2014 7:03 PM
> To: amber.ambermd.org
> Subject: Re: MMPBSA-ERROR for firstmolecule-dna
>
> Hi,
>
> I had added strip_mask, that helped me to solve GB calculations, but when
> PB calculations started the new error pops out.
>
> The GB calculations are successful, but their is error in PB calculations
> and I am stuck to the error "PB Bomb: pb_fdfrc: unknown ipb" in my receptor
> output file _MMPBSA_receptor_pb.mdout.0 (attached).
>
> Please suggest me what to do to solve this problem. For your information,
> I had tried the following suggestions:
> http://archive.ambermd.org/201303/0550.html
> http://archive.ambermd.org/201303/0550.html
> http://archive.ambermd.org/201212/0028.html
> http://archive.ambermd.org/201110/0485.html
>
> my input file is as follows:
>
> Input file for running PB and GB
> &general
> endframe=5000, verbose=1, keep_files=2, strip_mask=":WAT:SOD:CLA",
> # entropy=1,
> /
> &gb
> igb=2, saltcon=0.100
> /
> &pb
> istrng=0.100
> /
>
> Please suggest me some way to solve this error
>
> thanks in advance
>
> regards
>
> Abhi
>
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> http://lists.ambermd.org/mailman/listinfo/amber
>
>
--
Jason M. Swails
BioMaPS,
Rutgers University
Postdoctoral Researcher
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Received on Tue Dec 16 2014 - 21:00:02 PST
