i install amber and amber tools but when i want run this command i get some error:
acpype -i ref-ligand.mol2 -c user
acpype -i ref-ligandChimera.mol2 -c user
================================================================================================
| ACPYPE: AnteChamber PYthon Parser interfacE v. 2014-08-27 18:33:08Z Rev: 7828 (c) 2014 AWSdS |
================================================================================================
WARNING: no 'babel' executable, no PDB file as input can be used!
==> Reading user's charges from mol2 file...
==> ... charge set to 0
==> Executing Antechamber...
==> AC output file present... doing nothing
==> * Antechamber OK *
++++++++++start_quote+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
/bin/sh: 1: -i: not found
++++++++++end_quote+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
ERROR: Parmchk failed
ERROR: Tleap failed
==> Removing temporary files...
ACPYPE FAILED: [Errno 2] No such file or directory: 'ref-ligandChimera_AC.prmtop'
Total time of execution: less than a second
its ok or i do somethings wrong??
thanke you for your time.
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Received on Sun Dec 21 2014 - 09:00:02 PST
