Amber Archive May 2017 by author
418 messages
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Starting
Sun Apr 30 2017 - 20:00:02 PDT,
Ending
Wed May 31 2017 - 19:30:03 PDT
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Abudhahir Buhari
[AMBER] Fwd: Request for troubleshoot in MAWS (igem software from Heidelberg) based on AMBER
(Mon May 15 2017 - 01:24:23 PDT)
Adrian Roitberg
Re: [AMBER] Implicit solvation method giving the error number of triangulated 3-point waters found: 0
(Wed May 17 2017 - 12:53:28 PDT)
Re: [AMBER] Statistically estimating the error and data reliability for Jarzynski Method
(Wed May 17 2017 - 10:30:22 PDT)
Alessandro Contini
Re: [AMBER] resp charges
(Wed May 17 2017 - 01:27:19 PDT)
Alexander Adams
[AMBER] Missing File: charmmlipid2amber.csv
(Sun Apr 30 2017 - 23:28:02 PDT)
Andrea Spitaleri
Re: [AMBER] resp charges
(Wed May 17 2017 - 01:50:22 PDT)
Re: [AMBER] ff parameters
(Fri May 05 2017 - 12:46:19 PDT)
[AMBER] ff parameters
(Fri May 05 2017 - 00:38:28 PDT)
Andreas Tosstorff
Re: [AMBER] GPUs parallel problem
(Thu May 04 2017 - 02:21:41 PDT)
Re: [AMBER] How to restart MD
(Thu May 04 2017 - 00:11:52 PDT)
Artem Shekhovtsov
Re: [AMBER] resp charges
(Wed May 17 2017 - 01:34:05 PDT)
Bill Ross
Re: [AMBER] external electric field in Amber 16
(Wed May 31 2017 - 17:00:06 PDT)
Re: [AMBER] Antechamber can't transform Gaussian output file into *.mol2
(Wed May 31 2017 - 05:09:59 PDT)
Re: [AMBER] external electric field in Amber 16
(Tue May 30 2017 - 14:46:57 PDT)
Re: [AMBER] Fwd: Error while preparing docked complex for minimization
(Sun May 28 2017 - 13:53:17 PDT)
Re: [AMBER] Question about RMSD "jumps"
(Sat May 27 2017 - 17:48:05 PDT)
Re: [AMBER] add ligand parameters
(Fri May 26 2017 - 03:37:43 PDT)
Re: [AMBER] add ligand parameters
(Fri May 26 2017 - 01:50:10 PDT)
Re: [AMBER] AMBER error
(Wed May 24 2017 - 21:01:42 PDT)
Re: [AMBER] Which Linux distro for Amber16?
(Tue May 23 2017 - 21:33:47 PDT)
Re: [AMBER] Minimisation of a complex
(Mon May 22 2017 - 01:27:23 PDT)
Re: [AMBER] Minimisation of a complex
(Mon May 22 2017 - 01:12:00 PDT)
Re: [AMBER] Amber Error
(Thu May 18 2017 - 13:00:19 PDT)
Re: [AMBER] addions doubt
(Wed May 17 2017 - 01:13:54 PDT)
Re: [AMBER] sander API data structure
(Tue May 16 2017 - 10:52:24 PDT)
Re: [AMBER] <Na 1> Could not find vdW (or other) parameters for type: Na
(Mon May 15 2017 - 11:52:00 PDT)
Re: [AMBER] Water Analysis with SPAM
(Mon May 15 2017 - 11:34:14 PDT)
Re: [AMBER] Water Analysis with SPAM
(Mon May 15 2017 - 04:47:34 PDT)
Re: [AMBER] Water Analysis with SPAM
(Mon May 15 2017 - 03:22:45 PDT)
Re: [AMBER] Water Analysis with SPAM
(Mon May 15 2017 - 03:16:53 PDT)
Re: [AMBER] Water Analysis with SPAM
(Mon May 15 2017 - 02:54:51 PDT)
Re: [AMBER] Water Analysis with SPAM
(Mon May 15 2017 - 02:09:32 PDT)
Re: [AMBER] dimer rmsd issue.
(Sun May 14 2017 - 12:16:55 PDT)
Re: [AMBER] MCPB and Can not run MD simulation; some residue move out of protein
(Sat May 13 2017 - 23:51:19 PDT)
Re: [AMBER] Tip3p water box size for two different systems.
(Thu May 11 2017 - 22:52:06 PDT)
Brent Krueger
Re: [AMBER] add ligand parameters
(Fri May 26 2017 - 04:04:53 PDT)
Re: [AMBER] sander API data structure
(Mon May 22 2017 - 07:39:02 PDT)
Re: [AMBER] sander API data structure
(Tue May 16 2017 - 09:15:59 PDT)
[AMBER] sander API data structure
(Tue May 16 2017 - 06:43:26 PDT)
Budhathoki, Dipesh
Re: [AMBER] Regarding amber-gaussian QM/MM problem
(Fri May 05 2017 - 10:24:57 PDT)
[AMBER] Regarding amber-gaussian QM/MM problem
(Tue May 02 2017 - 15:35:08 PDT)
CA gmail
Re: [AMBER] mdgx configuration sampling
(Mon May 22 2017 - 00:36:22 PDT)
[AMBER] mdgx configuration sampling
(Fri May 19 2017 - 04:55:05 PDT)
Carlos Romero
Re: [AMBER] understanding results
(Thu May 18 2017 - 20:06:38 PDT)
[AMBER] understanding results
(Wed May 17 2017 - 11:46:28 PDT)
Carlos Simmerling
Re: [AMBER] external electric field in Amber 16
(Tue May 30 2017 - 07:43:23 PDT)
Re: [AMBER] Question on implementing igb=8, along with mbondi3
(Wed May 03 2017 - 03:28:58 PDT)
Changhao Wang
[AMBER] Water Geometry in SPCBOX Inconsistent with Literatures
(Mon May 29 2017 - 00:30:23 PDT)
Charles Lin
Re: [AMBER] External electric fields on CUDA enabled PMEMD
(Wed May 10 2017 - 21:37:02 PDT)
Re: [AMBER] 4.5 fold increase in memory consumption for nmr restraints going from amber14 to amber16
(Tue May 09 2017 - 09:02:45 PDT)
Re: [AMBER] 4.5 fold increase in memory consumption for nmr restraints going from amber14 to amber16
(Tue May 09 2017 - 08:24:56 PDT)
Re: [AMBER] External electric fields on CUDA enabled PMEMD
(Sun Apr 30 2017 - 19:32:00 PDT)
Charles Mariasoosai
[AMBER] EEL and VDW Notification on minimization with sander/pmemd
(Fri May 12 2017 - 09:57:53 PDT)
Charles-Alexandre Mattelaer
Re: [AMBER] LEaP failing after update to AmberTools17
(Wed May 03 2017 - 11:39:08 PDT)
[AMBER] LEaP failing after update to AmberTools17
(Wed May 03 2017 - 10:35:19 PDT)
Chetna Tyagi
Re: [AMBER] Error while upgrading to AmberTools 17
(Thu May 25 2017 - 04:15:11 PDT)
[AMBER] Error while upgrading to AmberTools 17
(Wed May 24 2017 - 03:29:51 PDT)
Re: [AMBER] Cpptraj calculates only three PHI-PSI angles in a 18-residue long peptide
(Mon May 08 2017 - 10:37:53 PDT)
[AMBER] Cpptraj calculates only three PHI-PSI angles in a 18-residue long peptide
(Mon May 08 2017 - 08:07:34 PDT)
Chris Moth
Re: [AMBER] Water Geometry in SPCBOX Inconsistent with Literatures
(Tue May 30 2017 - 09:57:04 PDT)
D'Auria, Raffaella
Re: [AMBER] Building distributable executable
(Wed May 17 2017 - 18:05:47 PDT)
[AMBER] Building distributable executable
(Tue May 16 2017 - 12:24:09 PDT)
Daniel Roe
Re: [AMBER] High pressure fluctuation in isothermal-isobaric ensemble
(Wed May 31 2017 - 12:09:44 PDT)
Re: [AMBER] random coil in the protein secondary structure analysis
(Tue May 30 2017 - 07:06:22 PDT)
Re: [AMBER] cpptraj GIST
(Fri May 26 2017 - 10:54:29 PDT)
Re: [AMBER] Translate the center of mass of the protein to the origin (0, 0, 0)
(Wed May 24 2017 - 06:23:32 PDT)
Re: [AMBER] NetCDF error: Invalid argument
(Mon May 22 2017 - 07:17:27 PDT)
Re: [AMBER] Regarding Native Contacts
(Mon May 22 2017 - 07:12:01 PDT)
Re: [AMBER] cpptraj nastruct local helical vectors?
(Fri May 19 2017 - 08:33:55 PDT)
Re: [AMBER] Building distributable executable
(Wed May 17 2017 - 11:49:49 PDT)
Re: [AMBER] Water Analysis with SPAM
(Tue May 16 2017 - 09:08:23 PDT)
Re: [AMBER] Reference structure for targeted MD
(Tue May 16 2017 - 09:02:15 PDT)
Re: [AMBER] Water Analysis with SPAM
(Tue May 16 2017 - 08:19:50 PDT)
Re: [AMBER] dimer rmsd issue.
(Tue May 16 2017 - 08:16:36 PDT)
Re: [AMBER] sander API data structure
(Tue May 16 2017 - 08:03:21 PDT)
Re: [AMBER] Water Analysis with SPAM
(Tue May 16 2017 - 07:49:58 PDT)
Re: [AMBER] how to draw Radial Distribution Functions?
(Wed May 10 2017 - 10:11:19 PDT)
Re: [AMBER] Problem in splitting mdcrd file with cpptraj
(Wed May 10 2017 - 08:48:56 PDT)
Re: [AMBER] question about commutation of sub-trajectories and frame aligning
(Wed May 10 2017 - 08:46:12 PDT)
Re: [AMBER] Cpptraj calculates only three PHI-PSI angles in a 18-residue long peptide
(Mon May 08 2017 - 13:04:18 PDT)
Re: [AMBER] Cpptraj calculates only three PHI-PSI angles in a 18-residue long peptide
(Mon May 08 2017 - 08:14:26 PDT)
Re: [AMBER] Fast 3-point water residue error for coordinates generated with parmed
(Fri May 05 2017 - 12:15:57 PDT)
Re: [AMBER] Question about the pairwise option in cpptraj
(Fri May 05 2017 - 11:48:45 PDT)
Re: [AMBER] Error when running MMPBSA calculation using Force field from CHARMM GUI membrane builder running on amber.
(Fri May 05 2017 - 11:29:08 PDT)
Re: [AMBER] The problem for image tool in AMBER
(Fri May 05 2017 - 06:14:01 PDT)
Re: [AMBER] intra-residue water bridge with cpptraj
(Fri May 05 2017 - 06:00:04 PDT)
Re: [AMBER] Error with 'surf' and acetonitrile-water solvent mixture
(Thu May 04 2017 - 08:54:32 PDT)
Re: [AMBER] The problem for image tool in AMBER
(Thu May 04 2017 - 08:49:53 PDT)
Re: [AMBER] Error with 'surf' and acetonitrile-water solvent mixture
(Thu May 04 2017 - 08:00:55 PDT)
Re: [AMBER] Error with 'surf' and acetonitrile-water solvent mixture
(Tue May 02 2017 - 10:45:28 PDT)
Re: [AMBER] Too many iterations in routine! in RMSD calculation
(Mon May 01 2017 - 09:23:09 PDT)
Re: [AMBER] Too many iterations in routine! in RMSD calculation
(Mon May 01 2017 - 08:55:58 PDT)
Re: [AMBER] Too many iterations in routine! in RMSD calculation
(Mon May 01 2017 - 08:29:09 PDT)
David A Case
Re: [AMBER] Citation for frcmod.parmbsc0, frcmod.ionsjc_tip3p
(Wed May 31 2017 - 05:25:43 PDT)
Re: [AMBER] amino-cyclopropyl parameters
(Wed May 31 2017 - 05:20:21 PDT)
Re: [AMBER] Dummy atoms when running antechamber in B4 (sustiva) tutorial
(Wed May 31 2017 - 05:15:22 PDT)
Re: [AMBER] amino-cyclopropyl parameters
(Tue May 30 2017 - 06:52:05 PDT)
Re: [AMBER] calculation of the binding energy in amber 12 or 14
(Sat May 20 2017 - 06:26:27 PDT)
Re: [AMBER] phosaa10 reference
(Thu May 18 2017 - 08:06:13 PDT)
Re: [AMBER] Could not find vdW (or other) parameters for type: Na+
(Thu May 18 2017 - 06:51:14 PDT)
Re: [AMBER] [Amber16]"cudaMemcpyToSymbol: SetSim copy to cSim failed invalid device symbol"
(Thu May 18 2017 - 06:42:34 PDT)
Re: [AMBER] understanding results
(Thu May 18 2017 - 06:35:19 PDT)
Re: [AMBER] Doubt about EVB/LES-PIMD
(Thu May 18 2017 - 06:30:40 PDT)
Re: [AMBER] <Na 1> Could not find vdW (or other) parameters for type: Na
(Fri May 12 2017 - 05:33:34 PDT)
Re: [AMBER] <Na 1> Could not find vdW (or other) parameters for type: Na
(Thu May 11 2017 - 12:02:00 PDT)
David Case
[AMBER] Input case causing NaN in sander
(Wed May 31 2017 - 19:10:34 PDT)
Re: [AMBER] Amber16 configure: error: could not find mpi library for --enable-mpi
(Mon May 29 2017 - 16:55:42 PDT)
Re: [AMBER] Input case causing NaN in sander (and possibly pmemd) (Ambertools17)
(Mon May 29 2017 - 16:32:38 PDT)
Re: [AMBER] convergence question about xmin
(Mon May 29 2017 - 13:06:40 PDT)
Re: [AMBER] RESP charge for protonated cytosine ribonucleotide
(Mon May 29 2017 - 12:46:34 PDT)
Re: [AMBER] Input case causing NaN in sander (and possibly pmemd) (Ambertools17)
(Mon May 29 2017 - 12:43:31 PDT)
Re: [AMBER] possible bug for reading &qmmm after &lmod
(Mon May 29 2017 - 12:34:07 PDT)
Re: [AMBER] Dummy atoms when running antechamber in B4 (sustiva) tutorial
(Mon May 29 2017 - 09:17:56 PDT)
[AMBER] Wrong quotation marks in manual
(Mon May 29 2017 - 09:07:50 PDT)
Re: [AMBER] Fwd: Error while preparing docked complex for minimization
(Sun May 28 2017 - 09:09:10 PDT)
Re: [AMBER] Spherical flat bottom restraint
(Sun May 28 2017 - 09:02:45 PDT)
Re: [AMBER] MD Simulation of chemical complex
(Thu May 25 2017 - 10:31:59 PDT)
Re: [AMBER] calculation of the binding energy in amber 12 or 14
(Thu May 25 2017 - 10:28:42 PDT)
Re: [AMBER] AMBER error
(Thu May 25 2017 - 07:54:44 PDT)
Re: [AMBER] . Re: NetCDF error: Invalid argument (David Case)
(Wed May 24 2017 - 17:26:42 PDT)
Re: [AMBER] Libgfortran error during amber tools install
(Tue May 23 2017 - 20:41:10 PDT)
Re: [AMBER] .prmtop file not saved
(Tue May 23 2017 - 20:34:18 PDT)
Re: [AMBER] NetCDF error: Invalid argument
(Mon May 22 2017 - 21:20:22 PDT)
Re: [AMBER] Unable to view the box coordinates in VMD
(Mon May 22 2017 - 06:06:28 PDT)
Re: [AMBER] Unstable umbrella simulation with Amber16 in GTX1080
(Sun May 21 2017 - 16:31:08 PDT)
Re: [AMBER] Unable to view the box coordinates in VMD
(Sun May 21 2017 - 16:23:54 PDT)
Re: [AMBER] NetCDF error: Invalid argument
(Sat May 20 2017 - 21:45:58 PDT)
Re: [AMBER-Developers] [AMBER] A9 tutorial analyse.sh problem
(Sat May 20 2017 - 21:38:52 PDT)
Re: [AMBER] Query regarding energy calcuation using 3D-RISM
(Sat May 20 2017 - 21:23:57 PDT)
Re: [AMBER] A9 tutorial analyse.sh problem
(Sat May 20 2017 - 06:31:19 PDT)
Re: [AMBER] Distance based mask and reference
(Sat May 20 2017 - 06:19:52 PDT)
Re: [AMBER] Amber Error
(Thu May 18 2017 - 19:00:52 PDT)
Re: [AMBER] Implicit solvation method giving the error number of triangulated 3-point waters found: 0
(Wed May 17 2017 - 18:17:40 PDT)
Re: [AMBER] Implicit solvation method giving the error number of triangulated 3-point waters found: 0
(Wed May 17 2017 - 18:14:31 PDT)
Re: [AMBER] Building distributable executable
(Wed May 17 2017 - 05:52:30 PDT)
Re: [AMBER] Reference structure for targeted MD
(Tue May 16 2017 - 05:28:30 PDT)
Re: [AMBER] Partial Mini error
(Mon May 15 2017 - 19:15:50 PDT)
Re: [AMBER] MCPB and Can not run MD simulation; some residue move out of protein
(Sun May 14 2017 - 05:42:31 PDT)
Re: [AMBER] Has Hessian printing been added?
(Sun May 14 2017 - 05:36:43 PDT)
Re: [AMBER] EEL and VDW Notification on minimization with sander/pmemd
(Sun May 14 2017 - 05:29:46 PDT)
Re: [AMBER] Possible bug in the GPU code
(Mon May 08 2017 - 18:14:57 PDT)
Re: [AMBER] ff parameters
(Sat May 06 2017 - 05:19:20 PDT)
Re: [AMBER] ff parameters
(Fri May 05 2017 - 05:05:31 PDT)
[AMBER] Question about the pairwise option in cpptraj
(Wed May 03 2017 - 18:30:21 PDT)
Re: [AMBER] LEaP failing after update to AmberTools17
(Wed May 03 2017 - 11:18:10 PDT)
Re: [AMBER] Ambertools coulomb constant
(Wed May 03 2017 - 10:30:22 PDT)
Re: [AMBER] AddToBox Failure
(Wed May 03 2017 - 10:20:16 PDT)
Re: [AMBER] DNA Tutorial B1 - Temperature Drop
(Wed May 03 2017 - 05:37:42 PDT)
Re: [AMBER] ntx=5 and ntx=7 (Sanderinput)
(Wed May 03 2017 - 05:27:41 PDT)
Re: [AMBER] AddtoBox failure
(Tue May 02 2017 - 18:24:55 PDT)
Re: [AMBER] does not have a type
(Mon May 01 2017 - 07:59:23 PDT)
David Cerutti
Re: [AMBER] Water Geometry in SPCBOX Inconsistent with Literatures
(Mon May 29 2017 - 01:24:54 PDT)
Re: [AMBER] mdgx configuration sampling
(Fri May 19 2017 - 10:23:13 PDT)
Re: [AMBER] mdgx configuration sampling
(Fri May 19 2017 - 08:33:34 PDT)
Re: [AMBER] resp charges
(Wed May 17 2017 - 02:58:48 PDT)
Re: [AMBER] AddtoBox failure
(Tue May 02 2017 - 19:50:52 PDT)
Debodyuti Dutta
[AMBER] finding number of atoms within a radius
(Wed May 24 2017 - 04:45:20 PDT)
Elvis Martis
Re: [AMBER] No Torsion terms
(Tue May 30 2017 - 06:26:07 PDT)
Re: [AMBER] Fwd: Error while preparing docked complex for minimization
(Sun May 28 2017 - 04:40:29 PDT)
Re: [AMBER] finding number of atoms within a radius
(Wed May 24 2017 - 05:54:34 PDT)
Re: [AMBER] AMBER Digest, Vol 1932, Issue 1
(Tue May 23 2017 - 01:27:02 PDT)
Re: [AMBER] [Amber16]"cudaMemcpyToSymbol: SetSim copy to cSim failed invalid device symbol"
(Thu May 18 2017 - 05:58:15 PDT)
Re: [AMBER] Could not find vdW (or other) parameters for type: Na+
(Thu May 18 2017 - 05:56:25 PDT)
Re: [AMBER] dimer rmsd issue.
(Sun May 14 2017 - 10:44:13 PDT)
Re: [AMBER] MCPB and Can not run MD simulation; some residue move out of protein
(Sat May 13 2017 - 22:11:16 PDT)
Re: [AMBER] error: At line 551 of file mdin_ctrl_dat.F90 (unit = 5, file = 'heat.mdin')
(Sat May 13 2017 - 07:33:06 PDT)
Re: [AMBER] error: At line 551 of file mdin_ctrl_dat.F90 (unit = 5, file = 'heat.mdin')
(Sat May 13 2017 - 06:21:00 PDT)
Re: [AMBER] error: At line 551 of file mdin_ctrl_dat.F90 (unit = 5, file = 'heat.mdin')
(Sat May 13 2017 - 06:17:22 PDT)
Re: [AMBER] EEL and VDW Notification on minimization with sander/pmemd
(Sat May 13 2017 - 01:11:17 PDT)
Re: [AMBER] How to use Amber in HPC
(Fri May 12 2017 - 04:40:31 PDT)
Re: [AMBER] Tip3p water box size for two different systems.
(Thu May 11 2017 - 22:42:34 PDT)
Re: [AMBER] Tip3p water box size for two different systems.
(Thu May 11 2017 - 22:18:59 PDT)
Re: [AMBER] MG angle parameter
(Wed May 10 2017 - 21:48:00 PDT)
Re: [AMBER] MG angle parameter
(Wed May 10 2017 - 07:21:49 PDT)
Re: [AMBER] Amber parameters for CPD and 6-4PP
(Tue May 09 2017 - 04:21:58 PDT)
Re: [AMBER] tleap-incorpoarating .frcmod, .prep files for unnatural nucleotides
(Mon May 08 2017 - 21:11:43 PDT)
Re: [AMBER] Cpptraj calculates only three PHI-PSI angles in a 18-residue long peptide
(Mon May 08 2017 - 09:51:27 PDT)
Re: [AMBER] Parameterization Ligand Boron
(Mon May 08 2017 - 07:45:48 PDT)
Re: [AMBER] How to restart MD
(Thu May 04 2017 - 00:12:58 PDT)
Re: [AMBER] Fwd: failed to generate parameter and topology file for protein-ligand complex containing zinc
(Tue May 02 2017 - 07:24:02 PDT)
Re: [AMBER] Missing File: charmmlipid2amber.csv
(Mon May 01 2017 - 00:03:57 PDT)
Eric Hansen
[AMBER] Has Hessian printing been added?
(Fri May 12 2017 - 12:47:17 PDT)
Francesco Gentile
[AMBER] Reference structure for targeted MD
(Mon May 15 2017 - 19:26:39 PDT)
FyD
Re: [AMBER] resp charges
(Thu May 18 2017 - 04:50:46 PDT)
Gabriel Jara
[AMBER] cpptraj GIST
(Fri May 26 2017 - 10:49:54 PDT)
Gard Nelson
[AMBER] Ambertools coulomb constant
(Tue May 02 2017 - 16:55:28 PDT)
Garima Singh
Re: [AMBER] AMBER Digest, Vol 1932, Issue 1
(Tue May 23 2017 - 00:17:18 PDT)
[AMBER] How to use Amber in HPC
(Fri May 12 2017 - 03:53:49 PDT)
[AMBER] How to restart MD
(Wed May 03 2017 - 23:48:32 PDT)
Goetz, Andreas
Re: [AMBER] Regarding amber-gaussian QM/MM problem
(Tue May 02 2017 - 16:07:24 PDT)
Gordon Richard Chalmers
Re: [AMBER] question about commutation of sub-trajectories and frame aligning
(Wed May 10 2017 - 10:36:08 PDT)
[AMBER] question about commutation of sub-trajectories and frame aligning
(Wed May 10 2017 - 05:56:42 PDT)
Gulsevin,Alican
Re: [AMBER] GPUs parallel problem
(Thu May 04 2017 - 02:29:26 PDT)
Habib Rozale
[AMBER] Distance regarding to interface between two solvents
(Wed May 10 2017 - 02:00:40 PDT)
Hadházi Ádám
[AMBER] Which Linux distro for Amber16?
(Mon May 22 2017 - 05:00:20 PDT)
[AMBER] reference or custom GPUs?
(Thu May 18 2017 - 03:00:57 PDT)
Hai Nguyen
Re: [AMBER] Error while upgrading to AmberTools 17
(Thu May 25 2017 - 05:56:30 PDT)
Re: [AMBER] Error while upgrading to AmberTools 17
(Wed May 24 2017 - 06:03:55 PDT)
Re: [AMBER] Wrong Quotation marks in Manual in several examplecodes
(Tue May 23 2017 - 21:06:28 PDT)
Re: [AMBER] Which Linux distro for Amber16?
(Tue May 23 2017 - 20:57:18 PDT)
Re: [AMBER] Libgfortran error during amber tools install
(Tue May 23 2017 - 20:52:19 PDT)
Re: [AMBER] Libgfortran error during amber tools install
(Tue May 23 2017 - 15:24:41 PDT)
Re: [AMBER] Installation of AMBER 16
(Tue May 23 2017 - 07:01:39 PDT)
Re: [AMBER] sander API data structure
(Mon May 22 2017 - 19:20:46 PDT)
Re: [AMBER] A9 tutorial analyse.sh problem
(Fri May 19 2017 - 18:05:47 PDT)
Re: [AMBER] A9 tutorial analyse.sh problem
(Fri May 19 2017 - 17:58:45 PDT)
Re: [AMBER] sander API data structure
(Tue May 16 2017 - 08:32:34 PDT)
Re: [AMBER] ff parameters
(Fri May 05 2017 - 13:17:49 PDT)
Hannes Loeffler
Re: [AMBER] How to use Amber GAFF force field for methylated DNA
(Fri May 19 2017 - 00:36:15 PDT)
Re: [AMBER] GAFF parameters in amber16 and amber14
(Fri May 19 2017 - 00:21:17 PDT)
Re: [AMBER] Statistically estimating the error and data reliability for Jarzynski Method
(Thu May 18 2017 - 00:40:15 PDT)
Re: [AMBER] Problem with parmed
(Wed May 17 2017 - 03:08:37 PDT)
Re: [AMBER] Statistically estimating the error and data reliability for Jarzynski Method
(Wed May 17 2017 - 02:12:44 PDT)
Re: [AMBER] Statistically estimating the error and data reliability for Jarzynski Method
(Wed May 17 2017 - 01:52:54 PDT)
Re: [AMBER] ntx=5 and ntx=7 (Sanderinput)
(Wed May 03 2017 - 00:31:05 PDT)
Re: [AMBER] Find entropy from non-equilibrium free energy calculation
(Tue May 02 2017 - 00:08:52 PDT)
Re: [AMBER] Restraint in Steered MD/Jarzynski method
(Mon May 01 2017 - 00:11:42 PDT)
Hofer, Florian
[AMBER] aMD and cpH-MD
(Thu May 04 2017 - 01:45:42 PDT)
Iain Bethune
[AMBER] Virial and Kinetic energy
(Tue May 23 2017 - 03:47:10 PDT)
Irfan Alibay
Re: [AMBER] Reg residue selection in trajectory
(Wed May 24 2017 - 11:34:17 PDT)
Jacopo Sgrignani
[AMBER] phosaa10 reference
(Thu May 18 2017 - 07:30:39 PDT)
[AMBER] resp charges
(Wed May 17 2017 - 01:11:21 PDT)
Jake
[AMBER] Help with PB simulations using MPI
(Thu May 18 2017 - 12:34:54 PDT)
Jason Swails
Re: [AMBER] MMGBSA energy decomposition per frame
(Tue May 30 2017 - 07:47:17 PDT)
Re: [AMBER] Which Linux distro for Amber16?
(Tue May 23 2017 - 21:28:19 PDT)
Re: [AMBER] Building distributable executable
(Wed May 17 2017 - 10:40:08 PDT)
Re: [AMBER] Problem with parmed
(Wed May 17 2017 - 04:17:00 PDT)
Re: [AMBER] sander API data structure
(Tue May 16 2017 - 10:39:10 PDT)
Re: [AMBER] ff parameters
(Mon May 08 2017 - 05:39:40 PDT)
Re: [AMBER] ff parameters
(Fri May 05 2017 - 11:31:13 PDT)
Jerrano Bowleg
[AMBER] Amber Error
(Thu May 18 2017 - 12:48:22 PDT)
Joanna Sarzynska
Re: [AMBER] intra-residue water bridge with cpptraj
(Fri May 05 2017 - 01:17:20 PDT)
Johannes Kalliauer
[AMBER] Wrong Quotation marks in Manual in several examplecodes
(Mon May 22 2017 - 01:59:09 PDT)
Re: [AMBER] DNA Tutorial B1 - Temperature Drop
(Wed May 03 2017 - 03:57:37 PDT)
[AMBER] ntx=5 and ntx=7 (Sanderinput)
(Wed May 03 2017 - 00:16:49 PDT)
Jones de Andrade
Re: [AMBER] resp charges
(Wed May 17 2017 - 06:01:45 PDT)
julian.zachmann selvita.home.pl
Re: [AMBER] Water Analysis with SPAM
(Tue May 16 2017 - 08:40:07 PDT)
Re: [AMBER] Water Analysis with SPAM
(Tue May 16 2017 - 08:09:24 PDT)
Re: [AMBER] Water Analysis with SPAM
(Mon May 15 2017 - 04:56:15 PDT)
Re: [AMBER] Water Analysis with SPAM
(Mon May 15 2017 - 04:27:48 PDT)
Re: [AMBER] Water Analysis with SPAM
(Mon May 15 2017 - 02:20:43 PDT)
Re: [AMBER] Water Analysis with SPAM
(Mon May 15 2017 - 01:55:38 PDT)
[AMBER] Water Analysis with SPAM
(Thu May 11 2017 - 07:29:58 PDT)
Junmei Wang
Re: [AMBER] Two questions for GAFF
(Wed May 10 2017 - 05:39:55 PDT)
Re: [AMBER] Atom type assignment by Antechamber
(Mon May 08 2017 - 08:19:48 PDT)
Kenneth Huang
[AMBER] cpptraj nastruct local helical vectors?
(Thu May 18 2017 - 12:03:55 PDT)
kungking Hanpaibool
Re: [AMBER] MCPB and Can not run MD simulation; some residue move out of protein
(Sat May 13 2017 - 23:36:57 PDT)
[AMBER] MCPB and Can not run MD simulation; some residue move out of protein
(Sat May 13 2017 - 13:05:59 PDT)
Re: [AMBER] MG angle parameter
(Wed May 10 2017 - 08:25:07 PDT)
Re: [AMBER] Too many iterations in routine! in RMSD calculation
(Mon May 01 2017 - 09:09:42 PDT)
Re: [AMBER] Too many iterations in routine! in RMSD calculation
(Mon May 01 2017 - 08:59:59 PDT)
Re: [AMBER] Too many iterations in routine! in RMSD calculation
(Mon May 01 2017 - 08:50:42 PDT)
kurisaki
[AMBER] Unstable umbrella simulation with Amber16 in GTX1080
(Thu May 18 2017 - 15:41:03 PDT)
Lachele Foley
Re: [AMBER] Cellulose simulation
(Mon May 08 2017 - 01:06:26 PDT)
Re: [AMBER] Molecule with glyco - single amino acid linkage?
(Sun May 07 2017 - 21:32:46 PDT)
leila karami
[AMBER] random coil in the protein secondary structure analysis
(Sat May 27 2017 - 09:04:03 PDT)
liu junjun
[AMBER] possible bug for reading &qmmm after &lmod
(Thu May 18 2017 - 09:00:01 PDT)
Re: [AMBER] convergence question about xmin
(Wed May 17 2017 - 10:22:00 PDT)
[AMBER] convergence question about xmin
(Tue May 16 2017 - 02:53:21 PDT)
Loris Moretti
Re: [AMBER] amino-cyclopropyl parameters
(Wed May 31 2017 - 00:32:48 PDT)
Re: [AMBER] add ligand parameters
(Tue May 30 2017 - 05:39:59 PDT)
Re: [AMBER] amino-cyclopropyl parameters
(Tue May 30 2017 - 05:39:51 PDT)
Re: [AMBER] add ligand parameters
(Fri May 26 2017 - 03:19:32 PDT)
[AMBER] add ligand parameters
(Fri May 26 2017 - 01:45:01 PDT)
[AMBER] amino-cyclopropyl parameters
(Fri May 26 2017 - 00:32:30 PDT)
luca maggi
Re: [AMBER] Cellulose simulation
(Mon May 08 2017 - 01:17:52 PDT)
[AMBER] Cellulose simulation
(Sun May 07 2017 - 07:37:18 PDT)
Lucas
Re: [AMBER] Amber16 configure: error: could not find mpi library for --enable-mpi
(Mon May 29 2017 - 13:19:27 PDT)
Ly, Thu Ngoc Anh
[AMBER] Question about RMSD "jumps"
(Sat May 27 2017 - 16:26:55 PDT)
M. Wong
[AMBER] Spherical flat bottom restraint
(Sat May 27 2017 - 20:41:16 PDT)
Manjula Saravanan
[AMBER] Fwd: Problem in splitting mdcrd file with cpptraj
(Thu May 11 2017 - 22:20:31 PDT)
[AMBER] Problem in splitting mdcrd file with cpptraj
(Tue May 09 2017 - 23:11:11 PDT)
Marcel Passon
Re: [AMBER] Error with 'surf' and acetonitrile-water solvent mixture
(Fri May 05 2017 - 07:43:06 PDT)
Marion, Antoine
Re: [AMBER] Distance based mask and reference
(Sat May 20 2017 - 06:44:48 PDT)
[AMBER] Distance based mask and reference
(Fri May 19 2017 - 09:15:21 PDT)
Mary Varughese
[AMBER] addions doubt
(Wed May 17 2017 - 00:05:22 PDT)
Matsuura, Azuma
Re: [AMBER] Two questions for GAFF
(Wed May 10 2017 - 18:01:15 PDT)
[AMBER] Two questions for GAFF
(Wed May 10 2017 - 00:58:16 PDT)
Re: [AMBER] Atom type assignment by Antechamber
(Mon May 08 2017 - 18:14:22 PDT)
[AMBER] Atom type assignment by Antechamber
(Sun May 07 2017 - 22:13:13 PDT)
Meiting Wang
[AMBER] GAFF parameters in amber16 and amber14
(Fri May 19 2017 - 00:14:19 PDT)
Meng Wu
[AMBER] Translate the center of mass of the protein to the origin (0, 0, 0)
(Wed May 24 2017 - 02:47:27 PDT)
Re: [AMBER] GPUs parallel problem
(Fri May 05 2017 - 02:36:59 PDT)
[AMBER] GPUs parallel problem
(Thu May 04 2017 - 01:26:20 PDT)
Michael Shokhen
[AMBER] Could not find vdW (or other) parameters for type: Na+
(Thu May 18 2017 - 04:13:40 PDT)
michal biler
Re: [AMBER] external electric field in Amber 16
(Wed May 31 2017 - 14:22:24 PDT)
Re: [AMBER] external electric field in Amber 16
(Tue May 30 2017 - 14:06:04 PDT)
[AMBER] external electric field in Amber 16
(Tue May 30 2017 - 07:39:20 PDT)
Miguel Rivera
Re: [AMBER] Error when running MMPBSA calculation using Force field from CHARMM GUI membrane builder running on amber.
(Thu May 04 2017 - 15:18:54 PDT)
MINGREN SHEN
[AMBER] How to use Amber GAFF force field for methylated DNA
(Thu May 18 2017 - 20:03:15 PDT)
NADIA RAHMAH
Re: [AMBER] Fwd: Error while preparing docked complex for minimization
(Mon May 29 2017 - 16:03:23 PDT)
[AMBER] Fwd: Error while preparing docked complex for minimization
(Sun May 28 2017 - 03:59:59 PDT)
Neha Gandhi
Re: [AMBER] AMBER error
(Thu May 25 2017 - 17:11:20 PDT)
[AMBER] AMBER error
(Wed May 24 2017 - 20:28:10 PDT)
Re: [AMBER] glycoprotein
(Tue May 02 2017 - 00:08:48 PDT)
[AMBER] glycoprotein
(Mon May 01 2017 - 23:49:10 PDT)
Neville Bethel
Re: [AMBER] External electric fields on CUDA enabled PMEMD
(Wed May 10 2017 - 18:54:11 PDT)
Nhai
Re: [AMBER] Installation of AMBER 16
(Tue May 23 2017 - 06:37:06 PDT)
Niel Henriksen
[AMBER] acdoctor: fatal error when reading carboxylates from .mol2 files
(Mon May 01 2017 - 15:09:32 PDT)
Nikita Devnarain
Re: [AMBER] Minimisation of a complex
(Mon May 22 2017 - 01:34:07 PDT)
Re: [AMBER] Minimisation of a complex
(Mon May 22 2017 - 01:19:04 PDT)
[AMBER] Minimisation of a complex
(Mon May 22 2017 - 00:54:09 PDT)
[AMBER] Partial Mini error
(Mon May 15 2017 - 05:33:02 PDT)
Nikolay N. Kuzmich
[AMBER] Antechamber can't transform Gaussian output file into *.mol2
(Wed May 31 2017 - 05:06:28 PDT)
Re: [AMBER] Dummy atoms when running antechamber in B4 (sustiva) tutorial
(Wed May 31 2017 - 04:43:20 PDT)
[AMBER] Dummy atoms when running antechamber in B4 (sustiva) tutorial
(Mon May 29 2017 - 06:08:32 PDT)
p.kartheek
[AMBER] Amber parameters for CPD and 6-4PP
(Tue May 09 2017 - 02:50:28 PDT)
[AMBER] tleap-incorpoarating .frcmod, .prep files for unnatural nucleotides
(Mon May 08 2017 - 10:33:43 PDT)
Paul Westphaelinger
Re: [AMBER] 4.5 fold increase in memory consumption for nmr restraints going from amber14 to amber16
(Tue May 09 2017 - 01:00:06 PDT)
Pedro Fernandes
[AMBER] Parameterization Ligand Boron
(Mon May 08 2017 - 06:09:46 PDT)
Pengfei Li
Re: [AMBER] KeyError: 'A' (MCPB.py)
(Wed May 31 2017 - 14:58:21 PDT)
Re: [AMBER] fcc_metals.lib not found
(Tue May 30 2017 - 10:40:09 PDT)
Re: [AMBER] KeyError: 'A' (MCPB.py)
(Tue May 30 2017 - 10:09:52 PDT)
Re: [AMBER] MCPB and Can not run MD simulation; some residue move out of protein
(Thu May 18 2017 - 09:45:22 PDT)
Re: [AMBER] CX1 missing connect0 atom._MCPB
(Wed May 10 2017 - 15:45:08 PDT)
Pratul K. Agarwal
Re: [AMBER] 4.5 fold increase in memory consumption for nmr restraints going from amber14 to amber16
(Tue May 09 2017 - 08:36:26 PDT)
[AMBER] Possible bug in the GPU code
(Mon May 08 2017 - 15:35:44 PDT)
Qinghua Liao
Re: [AMBER] Problem with parmed
(Wed May 17 2017 - 04:23:59 PDT)
Re: [AMBER] Problem with parmed
(Wed May 17 2017 - 03:16:54 PDT)
[AMBER] Problem with parmed
(Wed May 17 2017 - 03:00:42 PDT)
Ramin Salimi
[AMBER] High pressure fluctuation in isothermal-isobaric ensemble
(Wed May 31 2017 - 09:12:03 PDT)
Re: [AMBER] Citation for frcmod.parmbsc0, frcmod.ionsjc_tip3p
(Wed May 31 2017 - 05:41:36 PDT)
[AMBER] Citation for frcmod.parmbsc0, frcmod.ionsjc_tip3p
(Tue May 30 2017 - 17:33:58 PDT)
Re: [AMBER] Unable to view the box coordinates in VMD
(Mon May 22 2017 - 08:35:12 PDT)
Re: [AMBER] Unable to view the box coordinates in VMD
(Sun May 21 2017 - 22:51:55 PDT)
[AMBER] Unable to view the box coordinates in VMD
(Sun May 21 2017 - 10:55:32 PDT)
[AMBER] Statistically estimating the error and data reliability for Jarzynski Method
(Wed May 17 2017 - 13:26:41 PDT)
Re: [AMBER] Implicit solvation method giving the error number of triangulated 3-point waters found: 0
(Wed May 17 2017 - 13:25:19 PDT)
[AMBER] Implicit solvation method giving the error number of triangulated 3-point waters found: 0
(Wed May 17 2017 - 12:51:28 PDT)
Re: [AMBER] Statistically estimating the error and data reliability for Jarzynski Method
(Wed May 17 2017 - 10:50:16 PDT)
Re: [AMBER] Statistically estimating the error and data reliability for Jarzynski Method
(Wed May 17 2017 - 10:21:41 PDT)
Re: [AMBER] Statistically estimating the error and data reliability for Jarzynski Method
(Wed May 17 2017 - 02:00:54 PDT)
[AMBER] Statistically estimating the error and data reliability for Jarzynski Method
(Wed May 17 2017 - 01:24:54 PDT)
Re: [AMBER] error: At line 551 of file mdin_ctrl_dat.F90 (unit = 5, file = 'heat.mdin')
(Sat May 13 2017 - 06:43:56 PDT)
[AMBER] error: At line 551 of file mdin_ctrl_dat.F90 (unit = 5, file = 'heat.mdin')
(Sat May 13 2017 - 05:21:35 PDT)
[AMBER] Question on implementing igb=8, along with mbondi3
(Wed May 03 2017 - 00:26:23 PDT)
Re: [AMBER] Find entropy from non-equilibrium free energy calculation
(Tue May 02 2017 - 00:53:18 PDT)
[AMBER] Find entropy from non-equilibrium free energy calculation
(Mon May 01 2017 - 10:50:48 PDT)
Re: [AMBER] Restraint in Steered MD/Jarzynski method
(Mon May 01 2017 - 09:10:04 PDT)
Ray Luo
Re: [AMBER] Help with PB simulations using MPI
(Thu May 18 2017 - 14:11:25 PDT)
Robert Wohlhueter
Re: [AMBER] A9 tutorial analyse.sh problem
(Sun May 21 2017 - 08:40:55 PDT)
Re: [AMBER] A9 tutorial analyse.sh problem
(Sat May 20 2017 - 09:06:58 PDT)
[AMBER] A9 tutorial analyse.sh problem
(Fri May 19 2017 - 17:37:18 PDT)
Ross Walker
Re: [AMBER] reference or custom GPUs?
(Thu May 18 2017 - 17:22:11 PDT)
Re: [AMBER] reference or custom GPUs?
(Thu May 18 2017 - 14:50:10 PDT)
Re: [AMBER] [Amber16]"cudaMemcpyToSymbol: SetSim copy to cSim failed invalid device symbol"
(Thu May 18 2017 - 14:46:15 PDT)
Re: [AMBER] GPUs parallel problem
(Fri May 05 2017 - 05:05:58 PDT)
Re: [AMBER] GPUs parallel problem
(Thu May 04 2017 - 08:16:03 PDT)
ruqaiya khalil
[AMBER] MD Simulation of chemical complex
(Mon May 22 2017 - 06:18:15 PDT)
Sadegh Faramarzi Ganjabad
Re: [AMBER] Fast 3-point water residue error for coordinates
(Mon May 08 2017 - 13:09:40 PDT)
Re: [AMBER] Fast 3-point water residue error for coordinates
(Sun May 07 2017 - 23:46:54 PDT)
[AMBER] Fast 3-point water residue error for coordinates generated with parmed
(Fri May 05 2017 - 11:32:46 PDT)
Saeed Izadi
Re: [AMBER] Citation for frcmod.parmbsc0, frcmod.ionsjc_tip3p
(Tue May 30 2017 - 18:12:58 PDT)
Saikat Pal
Re: [AMBER] calculation of the binding energy in amber 12 or 14
(Tue May 23 2017 - 22:09:30 PDT)
[AMBER] calculation of the binding energy in amber 12 or 14
(Thu May 18 2017 - 22:33:30 PDT)
Saman Yousuf ali
[AMBER] dimer rmsd issue.
(Sun May 14 2017 - 10:13:54 PDT)
Re: [AMBER] Tip3p water box size for two different systems.
(Thu May 11 2017 - 22:30:43 PDT)
[AMBER] Tip3p water box size for two different systems.
(Thu May 11 2017 - 07:57:17 PDT)
Scott Brozell
Re: [AMBER] Antechamber can't transform Gaussian output file into *.mol2
(Wed May 31 2017 - 11:24:36 PDT)
Re: [AMBER] Building distributable executable
(Thu May 18 2017 - 12:07:07 PDT)
Re: [AMBER] [Amber16]"cudaMemcpyToSymbol: SetSim copy to cSim failed invalid device symbol"
(Thu May 18 2017 - 11:57:11 PDT)
Re: [AMBER] possible bug for reading &qmmm after &lmod
(Thu May 18 2017 - 11:34:07 PDT)
Re: [AMBER] Building distributable executable
(Wed May 17 2017 - 18:40:22 PDT)
Re: [AMBER] convergence question about xmin
(Wed May 17 2017 - 11:30:05 PDT)
Re: [AMBER] Building distributable executable
(Wed May 17 2017 - 11:20:26 PDT)
Re: [AMBER] Building distributable executable
(Wed May 17 2017 - 09:21:59 PDT)
Re: [AMBER] acdoctor: fatal error when reading carboxylates from .mol2 files
(Tue May 02 2017 - 00:20:56 PDT)
Scott Le Grand
Re: [AMBER] [Amber16]"cudaMemcpyToSymbol: SetSim copy to cSim failed invalid device symbol"
(Thu May 18 2017 - 15:16:01 PDT)
Re: [AMBER] reference or custom GPUs?
(Thu May 18 2017 - 15:14:59 PDT)
Shafaq Muzammal
Re: [AMBER] .prmtop file not saved
(Tue May 30 2017 - 01:40:28 PDT)
[AMBER] .prmtop file not saved
(Tue May 23 2017 - 05:33:51 PDT)
Sharon D. Morris
[AMBER] Fwd: failed to generate parameter and topology file for protein-ligand complex containing zinc
(Tue May 02 2017 - 05:22:55 PDT)
Sohag Biswas
[AMBER] fcc_metals.lib not found
(Mon May 29 2017 - 21:24:47 PDT)
[AMBER] fcc_metals.lib is not a valid databae
(Wed May 10 2017 - 04:58:24 PDT)
Song-Ho Chong
Re: [AMBER] Fast 3-point water residue error for coordinates
(Mon May 08 2017 - 08:22:53 PDT)
Sowmya Indrakumar
Re: [AMBER] does not have a type
(Mon May 01 2017 - 07:56:14 PDT)
Stregone
[AMBER] Doubt about EVB/LES-PIMD
(Wed May 17 2017 - 11:06:07 PDT)
Suchetana Gupta
[AMBER] Regarding Native Contacts
(Mon May 22 2017 - 03:28:01 PDT)
Sushi Shilpa
Re: [AMBER] KeyError: 'A' (MCPB.py)
(Tue May 30 2017 - 21:15:34 PDT)
[AMBER] KeyError: 'A' (MCPB.py)
(Mon May 29 2017 - 05:35:33 PDT)
sylvester kisembo
[AMBER] No Torsion terms
(Tue May 30 2017 - 06:15:39 PDT)
[AMBER] AddtoBox failure
(Tue May 02 2017 - 07:21:22 PDT)
Szymon Żaczek
Re: [AMBER] ERROR: Could not read coords from .rst file
(Thu May 11 2017 - 01:01:36 PDT)
Thakur, Abhishek
Re: [AMBER] amino-cyclopropyl parameters
(Fri May 26 2017 - 06:00:04 PDT)
Re: [AMBER] <Na 1> Could not find vdW (or other) parameters for type: Na
(Mon May 15 2017 - 09:01:42 PDT)
Re: [AMBER] <Na 1> Could not find vdW (or other) parameters for type: Na
(Thu May 11 2017 - 14:37:54 PDT)
[AMBER] <Na 1> Could not find vdW (or other) parameters for type: Na
(Thu May 11 2017 - 09:10:52 PDT)
[AMBER] CX1 missing connect0 atom._MCPB
(Wed May 10 2017 - 12:24:55 PDT)
Re: [AMBER] does not have a type
(Mon May 01 2017 - 07:58:44 PDT)
Thomas Evangelidis
[AMBER] MMGBSA energy decomposition per frame
(Sun May 28 2017 - 06:29:19 PDT)
Thomas Exner
[AMBER] early bird deadline extended
(Wed May 17 2017 - 08:56:52 PDT)
Tom Kurtzman
Re: [AMBER] cpptraj GIST
(Wed May 31 2017 - 05:52:27 PDT)
Tommaso Biagini
Re: [AMBER] MG angle parameter
(Wed May 10 2017 - 22:47:11 PDT)
Re: [AMBER] MG angle parameter
(Wed May 10 2017 - 21:17:17 PDT)
Re: [AMBER] MG angle parameter
(Wed May 10 2017 - 08:15:22 PDT)
[AMBER] MG angle parameter
(Wed May 10 2017 - 05:37:58 PDT)
Van Rompaey Dries
[AMBER] Libgfortran error during amber tools install
(Tue May 23 2017 - 10:57:43 PDT)
Vatsal Purohit
[AMBER] Ante_R.E.D script files.
(Mon May 15 2017 - 11:10:25 PDT)
Vertika Gautam
Re: [AMBER] Query regarding energy calcuation using 3D-RISM
(Sat May 20 2017 - 13:44:54 PDT)
Vidhya Srivatsan
Re: [AMBER] Reg residue selection in trajectory
(Wed May 24 2017 - 12:08:24 PDT)
[AMBER] Reg residue selection in trajectory
(Wed May 24 2017 - 11:07:12 PDT)
[AMBER] Installation of AMBER 16
(Tue May 23 2017 - 06:26:15 PDT)
Vishal Nemaysh
[AMBER] ERROR: Could not read coords from .rst file
(Thu May 11 2017 - 00:23:45 PDT)
xu qingliang
[AMBER] . Re: NetCDF error: Invalid argument (David Case)
(Wed May 24 2017 - 01:39:17 PDT)
[AMBER] NetCDF error: Invalid argument
(Sun May 21 2017 - 23:28:03 PDT)
[AMBER] NetCDF error: Invalid argument
(Sat May 20 2017 - 06:03:18 PDT)
xuzhh
[AMBER] RESP charge for protonated cytosine ribonucleotide
(Mon May 29 2017 - 03:42:02 PDT)
Yang Jinpeng
[AMBER] how to draw Radial Distribution Functions?
(Wed May 10 2017 - 05:15:30 PDT)
yunshi11 .
Re: [AMBER] Molecule with glyco - single amino acid linkage?
(Mon May 08 2017 - 15:18:09 PDT)
[AMBER] Molecule with glyco - single amino acid linkage?
(Sun May 07 2017 - 20:25:23 PDT)
Åke Sandgren
Re: [AMBER] Input case causing NaN in sander (and possibly pmemd) (Ambertools17)
(Mon May 29 2017 - 13:18:48 PDT)
[AMBER] Input case causing NaN in sander (and possibly pmemd) (Ambertools17)
(Fri May 19 2017 - 00:32:43 PDT)
冯国强
[AMBER] [Amber16]"cudaMemcpyToSymbol: SetSim copy to cSim failed invalid device symbol"
(Wed May 17 2017 - 23:23:58 PDT)
[AMBER] [Amber16]"cudaMemcpyToSymbol: SetSim copy to cSim failed invalid device symbol"
(Wed May 17 2017 - 23:18:10 PDT)
吴萌
[AMBER] MD under external electric field & GPUs parallel problem
(Tue May 02 2017 - 02:28:29 PDT)
张壮壮
Re: [AMBER] [SPAM] Re: consult about LEaP in amber
(Mon May 01 2017 - 07:28:07 PDT)
鲁俊波
Re: [AMBER] The problem for image tool in AMBER
(Thu May 04 2017 - 09:37:35 PDT)
[AMBER] The problem for image tool in AMBER
(Wed May 03 2017 - 20:20:58 PDT)
Last message date
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Wed May 31 2017 - 19:30:03 PDT
Archived on
: Fri Dec 20 2024 - 05:55:32 PST
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