Re: [AMBER] Unable to view the box coordinates in VMD

From: Ramin Salimi <>
Date: Mon, 22 May 2017 15:35:12 +0000

Dr. Case

Thanks so much for the reply.

I will.



From: David Case <>
Sent: Monday, May 22, 2017 8:06:28 AM
To: AMBER Mailing List
Subject: Re: [AMBER] Unable to view the box coordinates in VMD

On Mon, May 22, 2017, Ramin Salimi wrote:

> Is there any such possibility that we make a specific set of three
> dimensions for the box with a specific number N of water molecules when
> we are working in Leap trying to make .prmtop, and .inpcrd files? For
> example, I wanna make 13000 water molecules in a 70*70*70A0 box. Do we
> have any such capability?

Yes: look at the AddToBox program, which does exactly that. You can specify
any box size and number of water molecules.


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