[AMBER] Fwd: Problem in splitting mdcrd file with cpptraj

From: Manjula Saravanan <manjusimba.gmail.com>
Date: Fri, 12 May 2017 10:50:31 +0530

*With Best Regards*
*S. Manjula*
*Research Scholar*
*Laboratory of Biocrystallography and Computational Molecular Biology*
*Department of Physics*
*Periyar University*
*Salem-11*
*Tamilnadu*



Dear Sir/Madam,
                I am trying to split my mdcrd file which contains 1580
frames. I want only 50 frames starting from 1159-1209 for the normal mode
calculation. my input file is,

t


*rajin prod3.mdcrd 1159 1209 1 trajout prod30ns_50frames1.mdcrd*
But it shows some error in the output as follows,













*Error: start 1159 > #Frames (141), no frames will be processed.Error:
Could not set up input trajectory 'prod3.mdcrd'. 1 errors encountered
reading input.CPPTRAJ: Trajectory Analysis. V14.25 ___ ___ ___
___ | \/ | \/ | \/ | _|_/\_|_/\_|_/\_|_ Reading
'com_solv.prmtop' as Amber TopologyINPUT: Reading Input from file
cpptraj.in <http://cpptraj.in> [trajin prod3.mdcrd 1159 1209 50 ]
Reading 'prod3.mdcrd' as Amber TrajectoryTIME: Total execution time: 0.3070
seconds.*

Kindly help me to solve this problem.

*With Best Regards*
*S. Manjula*
*Research Scholar*
*Laboratory of Biocrystallography and Computational Molecular Biology*
*Department of Physics*
*Periyar University*
*Salem-11*
*Tamilnadu*
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu May 11 2017 - 22:30:03 PDT
Custom Search