My apologies for posting this query. I found the guidelines in the AMBER
manual.
On 2 May 2017 at 16:49, Neha Gandhi <n.gandhiau.gmail.com> wrote:
>
> Dear List,
>
> I am using the glycoprotein builder from the glycam website. I want to use
> this structure in AMBER.
>
> When I use the downloaded structure in AMBER, tleap will immediately add
> hydrogen to the aminoacid i.e. Serine which is connected to the sugar
> GlcNAc.
>
> What is the correct way to add glyco-peptide linkage in AMBER?
>
>
> Many thanks,
> Neha
>
--
Regards,
Dr. Neha S. Gandhi,
Vice Chancellor's Research Fellow,
Queensland University of Technology,
2 George Street, Brisbane, QLD 4000
Australia
LinkedIn
Research Gate
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Received on Tue May 02 2017 - 00:30:02 PDT
