Hi,
To start, check out the manual entry for the 'nativecontacts' command.
Also, I recommend using the AmberTools 17 version of this command as
there have been several improvements made to the code since AmberTools
16.
-Dan
On Mon, May 22, 2017 at 6:28 AM, Suchetana Gupta <tutulg.gmail.com> wrote:
> Dear Amber Users
> I'd be really grateful if someone can explain to me in detail, the outputs
> of the native contacts function in cpptraj Amber 16.
> I'd like to check for interactions of ligand with protein and used native
> contacts for checking the contacts.
> Any paper for reference?
> Thanks in advance
> Suchetana Gupta
> IIT Madras
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--
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Mon May 22 2017 - 07:30:02 PDT
