[AMBER] Tip3p water box size for two different systems.

From: Saman Yousuf ali <saman.yousufali64.yahoo.com>
Date: Thu, 11 May 2017 14:57:17 +0000 (UTC)

Dear All,
I am interested to simulate complex protein system in dimeric and monomeric form separately. Residues in case of monomeric system is 1-268 including one Ligand and cofactor. Dimeric system is double in size. My question is for solvation of each systems tip3p water size should be same for both? or dimeric system box size must be bigger in size as compared to monomer?

Thanks




 
 

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Received on Thu May 11 2017 - 08:00:03 PDT