Hi everyone,
Has anyone had trouble recently getting AddtoBox to work in Ambertools 16/17?
I have tried this command on my machine and on the super computer:
AddToBox -c start.pdb -a input.pdb -na 7 -o combo.pdb -P 26 -RP 3.0 -RW 6.0 -G 0.2 -V 1
But i never get any molecules added even after recursive tries. This is always the result:
AddToBox >> Added 0 residues.
AddToBox >> Residue goal not achieved.
AddToBox >> Re-attempting with solvent clipping radius 4.3740.
GetPDB >> Found 26 atoms in combo.pdb.
GetPDB >> Bracketed 1 residues.
GetPDB >> Found 26 atoms in L.pdb.
GetPDB >> Bracketed 1 residues
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue May 02 2017 - 07:30:02 PDT
