Hi,
We need more information before we can help. What version of Amber are
you using, and what was your exact input to parmed? It may also help
if you can attach your topology (if it's not too big) or at least
describe your system somehow.
-Dan
On Fri, May 5, 2017 at 2:32 PM, Sadegh Faramarzi Ganjabad
<safaramarziganjabad.mix.wvu.edu> wrote:
> Hello,
>
> I have generated AMBER prm/coord input from CHARMM ff parameters with
> parmed. When I try to run them with AMBER is gives the following error;
>
> --------------------------------------------------------------------------------
> 3. ATOMIC COORDINATES AND VELOCITIES
> --------------------------------------------------------------------------------
>
> begin time read from input coords = 0.000 ps
>
> Error: Fast 3-point water residue, name and bond data incorrect!
>
> I have seen similar errors on AMBER mailing list, but they are for inputs
> generated with tleap. Does anybody know how can I fix this error?
>
> Thanks,
> Sadegh
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--
-------------------------
Daniel R. Roe
Laboratory of Computational Biology
National Institutes of Health, NHLBI
5635 Fishers Ln, Rm T900
Rockville MD, 20852
https://www.lobos.nih.gov/lcb
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Received on Fri May 05 2017 - 12:30:02 PDT
